From 5debe59e82a20bb3119fb95480447730e41168f9 Mon Sep 17 00:00:00 2001
From: Arne Stabenau <stabenau@sanger.ac.uk>
Date: Thu, 11 Oct 2001 15:12:18 +0000
Subject: [PATCH] contig_landmarkMarker table renamed and columns renamed in
it. Code changed accordingly.
---
modules/Bio/EnsEMBL/DBSQL/ChromosomeAdaptor.pm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/ChromosomeAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ChromosomeAdaptor.pm
index 3e41ceded4..178ae173b8 100644
--- a/modules/Bio/EnsEMBL/DBSQL/ChromosomeAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/ChromosomeAdaptor.pm
@@ -118,6 +118,7 @@ sub get_landmark_MarkerFeatures_old{
my ($self,$chr_name) = @_;
my $glob = 1000;
+ $self->throw( "Method deprecated. " );
my $statement= " SELECT
IF (sgp.raw_ori=1,(f.seq_start+sgp.chr_start-sgp.raw_start-1),
@@ -188,11 +189,11 @@ sub get_landmark_MarkerFeatures{
$glob = 500000;
}
- my $statement= " SELECT start,
- end,
- strand,
+ my $statement= " SELECT chr_start,
+ chr_end,
+ chr_strand,
name
- FROM contig_landmarkMarker
+ FROM landmarkMarker
WHERE chr_name = '$chr_name'
ORDER BY start
";
--
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