From 5f6eb75d541a5ee8fe5a4e17cfa52dd31b6eef17 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Tue, 2 Aug 2005 09:04:49 +0000
Subject: [PATCH] Added db_display_name fetching to _fetch_all_by_obj
---
modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
index d6a1019e4a..f43c9b5094 100644
--- a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
@@ -98,6 +98,7 @@ sub fetch_by_dbID {
}
$exDB->add_synonym( $synonym ) if ($synonym);
+
}
$sth->finish();
@@ -603,7 +604,7 @@ sub _fetch_by_object_type {
SELECT xref.xref_id, xref.dbprimary_acc, xref.display_label, xref.version,
xref.description,
exDB.dbprimary_acc_linkable, exDB.display_label_linkable, exDB.priority,
- exDB.db_name, exDB.release, exDB.status,
+ exDB.db_name, exDB.release, exDB.status, exDB.db_display_name,
oxr.object_xref_id,
es.synonym,
idt.query_identity, idt.target_identity, idt.hit_start,
@@ -627,7 +628,7 @@ sub _fetch_by_object_type {
while ( my $arrRef = $sth->fetchrow_arrayref() ) {
my ( $refID, $dbprimaryId, $displayid, $version,
$desc, $primary_id_linkable, $display_id_linkable, $priority,
- $dbname, $release, $exDB_status, $objid,
+ $dbname, $release, $exDB_status, $exDB_db_display_name, $objid,
$synonym, $queryid, $targetid, $query_start, $query_end,
$translation_start, $translation_end, $cigar_line,
$score, $evalue, $analysis_id, $linkage_type ) = @$arrRef;
@@ -678,6 +679,7 @@ sub _fetch_by_object_type {
$exDB->primary_id_linkable($primary_id_linkable);
$exDB->display_id_linkable($display_id_linkable);
$exDB->priority($priority);
+ $exDB->db_display_name($exDB_db_display_name);
push( @out, $exDB );
$seen{$refID} = $exDB;
--
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