diff --git a/misc-scripts/unmapped_reason/unmapped_reason.txt b/misc-scripts/unmapped_reason/unmapped_reason.txt
index 744e619aa0a36f8fe385a19f3072d6be65997ace..e1f4ef5a2f36b49a15eac8dcd39c1eb91a10cb9e 100644
--- a/misc-scripts/unmapped_reason/unmapped_reason.txt
+++ b/misc-scripts/unmapped_reason/unmapped_reason.txt
@@ -6,65 +6,37 @@
 6	Failed to match at thresholds	Unable to match at the thresholds of 90% for the query or 90% for the target
 7	No Master	The dependent xref was not matched due to there being no master xref
 8	Master failed	The dependent xref was not matched due to the master xref not being mapped
-40	Was not best match	Did not top best transcript match score (0.75)
-41	Was not best match	Did not top best transcript match score (0.76)
-42	Was not best match	Did not top best transcript match score (0.77)
-43	Was not best match	Did not top best transcript match score (0.78)
-44	Was not best match	Did not top best transcript match score (0.79)
-45	Was not best match	Did not top best transcript match score (0.80)
-46	Was not best match	Did not top best transcript match score (0.81)
-47	Was not best match	Did not top best transcript match score (0.82)
-48	Was not best match	Did not top best transcript match score (0.83)
-49	Was not best match	Did not top best transcript match score (0.84)
-50	Was not best match	Did not top best transcript match score (0.85)
-51	Was not best match	Did not top best transcript match score (0.86)
-52	Was not best match	Did not top best transcript match score (0.87)
-53	Was not best match	Did not top best transcript match score (0.88)
-54	Was not best match	Did not top best transcript match score (0.89)
-55	Was not best match	Did not top best transcript match score (0.90)
-56	Was not best match	Did not top best transcript match score (0.91)
-57	Was not best match	Did not top best transcript match score (0.92)
-58	Was not best match	Did not top best transcript match score (0.93)
-59	Was not best match	Did not top best transcript match score (0.94)
-60	Was not best match	Did not top best transcript match score (0.95)
-61	Was not best match	Did not top best transcript match score (0.96)
-62	Was not best match	Did not top best transcript match score (0.97)
-63	Was not best match	Did not top best transcript match score (0.98)
-64	Was not best match	Did not top best transcript match score (0.99)
-65	Was not best match	Did not top best transcript match score (1.00)
 66	Did not meet threshold	Match score for transcript lower than threshold (0.75)
+65	Was not best match	Did not top best transcript match score (1.00)
+64	Was not best match	Did not top best transcript match score (0.99)
+63	Was not best match	Did not top best transcript match score (0.98)
+62	Was not best match	Did not top best transcript match score (0.97)
+61	Was not best match	Did not top best transcript match score (0.96)
+60	Was not best match	Did not top best transcript match score (0.95)
+59	Was not best match	Did not top best transcript match score (0.94)
+58	Was not best match	Did not top best transcript match score (0.93)
+57	Was not best match	Did not top best transcript match score (0.92)
+56	Was not best match	Did not top best transcript match score (0.91)
+55	Was not best match	Did not top best transcript match score (0.90)
+54	Was not best match	Did not top best transcript match score (0.89)
+53	Was not best match	Did not top best transcript match score (0.88)
+52	Was not best match	Did not top best transcript match score (0.87)
+51	Was not best match	Did not top best transcript match score (0.86)
+50	Was not best match	Did not top best transcript match score (0.85)
+49	Was not best match	Did not top best transcript match score (0.84)
+48	Was not best match	Did not top best transcript match score (0.83)
+47	Was not best match	Did not top best transcript match score (0.82)
+46	Was not best match	Did not top best transcript match score (0.81)
+45	Was not best match	Did not top best transcript match score (0.80)
+44	Was not best match	Did not top best transcript match score (0.79)
+43	Was not best match	Did not top best transcript match score (0.78)
+42	Was not best match	Did not top best transcript match score (0.77)
+41	Was not best match	Did not top best transcript match score (0.76)
+40	Was not best match	Did not top best transcript match score (0.75)
 67	No overlap	No coordinate overlap with any Ensembl transcript
 96	Failed to match at thresholds	Unable to match at the thresholds of 100% for the query or 100% for the target
-97	Was not best match	Did not top best transcript match score (0.75)
-98	Was not best match	Did not top best transcript match score (0.76)
-99	Was not best match	Did not top best transcript match score (0.77)
-100	Was not best match	Did not top best transcript match score (0.78)
-101	Was not best match	Did not top best transcript match score (0.79)
-102	Was not best match	Did not top best transcript match score (0.80)
-103	Was not best match	Did not top best transcript match score (0.81)
-104	Was not best match	Did not top best transcript match score (0.82)
-105	Was not best match	Did not top best transcript match score (0.83)
-106	Was not best match	Did not top best transcript match score (0.84)
-107	Was not best match	Did not top best transcript match score (0.85)
-108	Was not best match	Did not top best transcript match score (0.86)
-109	Was not best match	Did not top best transcript match score (0.87)
-110	Was not best match	Did not top best transcript match score (0.88)
-111	Was not best match	Did not top best transcript match score (0.89)
-112	Was not best match	Did not top best transcript match score (0.90)
-113	Was not best match	Did not top best transcript match score (0.91)
-114	Was not best match	Did not top best transcript match score (0.92)
-115	Was not best match	Did not top best transcript match score (0.93)
-116	Was not best match	Did not top best transcript match score (0.94)
-117	Was not best match	Did not top best transcript match score (0.95)
-118	Was not best match	Did not top best transcript match score (0.96)
-119	Was not best match	Did not top best transcript match score (0.97)
-120	Was not best match	Did not top best transcript match score (0.98)
-121	Was not best match	Did not top best transcript match score (0.99)
-122	Was not best match	Did not top best transcript match score (1.00)
-123	Did not meet threshold	Match score for transcript lower than threshold (0.75)
-124	No overlap	No coordinate overlap with any Ensembl transcript
 125	Failed to match at thresholds	Unable to match at the thresholds of 55% for the query or 55% for the target
-126	>10% N-strings/	More than 10% of the sequence consists of strings of Ns. Sequences are not rejected for this reason but this may explain a low coverage hit
+126	>10% N-strings	More than 10% of the sequence consists of strings of Ns. Sequences are not rejected for this reason but this may explain a low coverage hit
 127	All long introns	Every intron in these hits is of length 250000-400000bp, we require at least one intron to be shorter than 250000bp
 128	GSS sequence	This cDNA has been excluded from the analysis because it is in the GSS (Genome Survey Sequence) division of GenBank
 129	Low coverage	Coverage of the best alignment is less than 90% - see query_score for coverage