From 5f8de429c562db96e43684b5d51667c285d0716b Mon Sep 17 00:00:00 2001 From: Magali Ruffier <mr6@ebi.ac.uk> Date: Tue, 16 Nov 2010 13:47:44 +0000 Subject: [PATCH] file synchronized with the production database --- .../unmapped_reason/unmapped_reason.txt | 82 ++++++------------- 1 file changed, 27 insertions(+), 55 deletions(-) diff --git a/misc-scripts/unmapped_reason/unmapped_reason.txt b/misc-scripts/unmapped_reason/unmapped_reason.txt index 744e619aa0..e1f4ef5a2f 100644 --- a/misc-scripts/unmapped_reason/unmapped_reason.txt +++ b/misc-scripts/unmapped_reason/unmapped_reason.txt @@ -6,65 +6,37 @@ 6 Failed to match at thresholds Unable to match at the thresholds of 90% for the query or 90% for the target 7 No Master The dependent xref was not matched due to there being no master xref 8 Master failed The dependent xref was not matched due to the master xref not being mapped -40 Was not best match Did not top best transcript match score (0.75) -41 Was not best match Did not top best transcript match score (0.76) -42 Was not best match Did not top best transcript match score (0.77) -43 Was not best match Did not top best transcript match score (0.78) -44 Was not best match Did not top best transcript match score (0.79) -45 Was not best match Did not top best transcript match score (0.80) -46 Was not best match Did not top best transcript match score (0.81) -47 Was not best match Did not top best transcript match score (0.82) -48 Was not best match Did not top best transcript match score (0.83) -49 Was not best match Did not top best transcript match score (0.84) -50 Was not best match Did not top best transcript match score (0.85) -51 Was not best match Did not top best transcript match score (0.86) -52 Was not best match Did not top best transcript match score (0.87) -53 Was not best match Did not top best transcript match score (0.88) -54 Was not best match Did not top best transcript match score (0.89) -55 Was not best match Did not top best transcript match score (0.90) -56 Was not best match Did not top best transcript match score (0.91) -57 Was not best match Did not top best transcript match score (0.92) -58 Was not best match Did not top best transcript match score (0.93) -59 Was not best match Did not top best transcript match score (0.94) -60 Was not best match Did not top best transcript match score (0.95) -61 Was not best match Did not top best transcript match score (0.96) -62 Was not best match Did not top best transcript match score (0.97) -63 Was not best match Did not top best transcript match score (0.98) -64 Was not best match Did not top best transcript match score (0.99) -65 Was not best match Did not top best transcript match score (1.00) 66 Did not meet threshold Match score for transcript lower than threshold (0.75) +65 Was not best match Did not top best transcript match score (1.00) +64 Was not best match Did not top best transcript match score (0.99) +63 Was not best match Did not top best transcript match score (0.98) +62 Was not best match Did not top best transcript match score (0.97) +61 Was not best match Did not top best transcript match score (0.96) +60 Was not best match Did not top best transcript match score (0.95) +59 Was not best match Did not top best transcript match score (0.94) +58 Was not best match Did not top best transcript match score (0.93) +57 Was not best match Did not top best transcript match score (0.92) +56 Was not best match Did not top best transcript match score (0.91) +55 Was not best match Did not top best transcript match score (0.90) +54 Was not best match Did not top best transcript match score (0.89) +53 Was not best match Did not top best transcript match score (0.88) +52 Was not best match Did not top best transcript match score (0.87) +51 Was not best match Did not top best transcript match score (0.86) +50 Was not best match Did not top best transcript match score (0.85) +49 Was not best match Did not top best transcript match score (0.84) +48 Was not best match Did not top best transcript match score (0.83) +47 Was not best match Did not top best transcript match score (0.82) +46 Was not best match Did not top best transcript match score (0.81) +45 Was not best match Did not top best transcript match score (0.80) +44 Was not best match Did not top best transcript match score (0.79) +43 Was not best match Did not top best transcript match score (0.78) +42 Was not best match Did not top best transcript match score (0.77) +41 Was not best match Did not top best transcript match score (0.76) +40 Was not best match Did not top best transcript match score (0.75) 67 No overlap No coordinate overlap with any Ensembl transcript 96 Failed to match at thresholds Unable to match at the thresholds of 100% for the query or 100% for the target -97 Was not best match Did not top best transcript match score (0.75) -98 Was not best match Did not top best transcript match score (0.76) -99 Was not best match Did not top best transcript match score (0.77) -100 Was not best match Did not top best transcript match score (0.78) -101 Was not best match Did not top best transcript match score (0.79) -102 Was not best match Did not top best transcript match score (0.80) -103 Was not best match Did not top best transcript match score (0.81) -104 Was not best match Did not top best transcript match score (0.82) -105 Was not best match Did not top best transcript match score (0.83) -106 Was not best match Did not top best transcript match score (0.84) -107 Was not best match Did not top best transcript match score (0.85) -108 Was not best match Did not top best transcript match score (0.86) -109 Was not best match Did not top best transcript match score (0.87) -110 Was not best match Did not top best transcript match score (0.88) -111 Was not best match Did not top best transcript match score (0.89) -112 Was not best match Did not top best transcript match score (0.90) -113 Was not best match Did not top best transcript match score (0.91) -114 Was not best match Did not top best transcript match score (0.92) -115 Was not best match Did not top best transcript match score (0.93) -116 Was not best match Did not top best transcript match score (0.94) -117 Was not best match Did not top best transcript match score (0.95) -118 Was not best match Did not top best transcript match score (0.96) -119 Was not best match Did not top best transcript match score (0.97) -120 Was not best match Did not top best transcript match score (0.98) -121 Was not best match Did not top best transcript match score (0.99) -122 Was not best match Did not top best transcript match score (1.00) -123 Did not meet threshold Match score for transcript lower than threshold (0.75) -124 No overlap No coordinate overlap with any Ensembl transcript 125 Failed to match at thresholds Unable to match at the thresholds of 55% for the query or 55% for the target -126 >10% N-strings/ More than 10% of the sequence consists of strings of Ns. Sequences are not rejected for this reason but this may explain a low coverage hit +126 >10% N-strings More than 10% of the sequence consists of strings of Ns. Sequences are not rejected for this reason but this may explain a low coverage hit 127 All long introns Every intron in these hits is of length 250000-400000bp, we require at least one intron to be shorter than 250000bp 128 GSS sequence This cDNA has been excluded from the analysis because it is in the GSS (Genome Survey Sequence) division of GenBank 129 Low coverage Coverage of the best alignment is less than 90% - see query_score for coverage -- GitLab