From 60976787653dd9e70e005879ba06bda72abde813 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Tue, 13 Nov 2007 09:56:48 +0000
Subject: [PATCH] MarkerSymbol --> MGI
---
misc-scripts/xref_mapping/XrefParser/GOParser.pm | 4 +++-
misc-scripts/xref_mapping/parsing_information.txt | 4 ++--
2 files changed, 5 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/GOParser.pm b/misc-scripts/xref_mapping/XrefParser/GOParser.pm
index 5ea3d75f8a..a5d98fdc71 100644
--- a/misc-scripts/xref_mapping/XrefParser/GOParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/GOParser.pm
@@ -57,7 +57,9 @@ sub run {
# complication with GO xrefs from JAX - linked to MGI symbols, which are themselves
# dependent, so we need to get the MGI->Uniprot mapping and store the *Uniprot*
# as the master xref
- my (%mgi_to_uniprot) = %{$self->get_existing_mappings("MarkerSymbol", "Uniprot/Swissprot", $species_id)};
+ my %mgi_to_uniprot = %{
+ $self->get_existing_mappings( "MGI", "Uniprot/Swissprot",
+ $species_id ) };
my %worm;
my %worm_label;
diff --git a/misc-scripts/xref_mapping/parsing_information.txt b/misc-scripts/xref_mapping/parsing_information.txt
index 27af22b336..a5c9926b32 100644
--- a/misc-scripts/xref_mapping/parsing_information.txt
+++ b/misc-scripts/xref_mapping/parsing_information.txt
@@ -332,10 +332,10 @@ they match to. So direct Xrefs are created for these.
Mouse
-----
-MarkerSymbol
+MGI
------------
-Also known as MGI.
+Previously known as 'MarkerSymbol'.
ftp://ftp.informatics.jax.org/pub/reports/MRK_SwissProt_TrEMBL.rpt
ftp://ftp.informatics.jax.org/pub/reports/MRK_Synonym.sql.rpt
--
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