diff --git a/misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm b/misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm index beb34a238d105cb5074a16ad45719b5066d93ddb..6b59bdd3f290efceb5b6459df42e493b463d9405 100644 --- a/misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm @@ -103,13 +103,10 @@ sub run_script { print "Loading the Registry\n" if $verbose; $registry->load_registry_from_multiple_dbs( { - '-host' => 'ens-staging1', + '-host' => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, '-user' => 'ensro', }, - { - '-host' => 'ens-staging2', - '-user' => 'ensro', - } ); $gene_adaptor = $registry->get_adaptor($species_name, 'core', 'Gene'); } elsif ($project eq 'ensemblgenomes') { diff --git a/misc-scripts/xref_mapping/XrefParser/CoreXrefParser.pm b/misc-scripts/xref_mapping/XrefParser/CoreXrefParser.pm index 5ef2408d658af42b1c2a00ea5029146c460d78e6..c30fcfde0906e3292d881d90eb8234aec4545fb1 100644 --- a/misc-scripts/xref_mapping/XrefParser/CoreXrefParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/CoreXrefParser.pm @@ -71,13 +71,10 @@ sub run_script { if ($project eq 'ensembl') { $registry->load_registry_from_multiple_dbs( { - '-host' => 'ens-staging1', + '-host' => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, '-user' => 'ensro', }, - { - '-host' => 'ens-staging2', - '-user' => 'ensro', - }, ); } elsif ($project eq 'ensemblgenomes') { diff --git a/misc-scripts/xref_mapping/XrefParser/InterproFromCoreParser.pm b/misc-scripts/xref_mapping/XrefParser/InterproFromCoreParser.pm index 1d4e77ccd6a36ceeca625fc6c5488f73ec8a0819..c687092fa7993b4b5b81646b0fbe3f74c7b4ab86 100755 --- a/misc-scripts/xref_mapping/XrefParser/InterproFromCoreParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/InterproFromCoreParser.pm @@ -50,11 +50,8 @@ sub run_script { if ($project eq 'ensembl') { $registry->load_registry_from_multiple_dbs( { - '-host' => 'ens-staging1', - '-user' => 'ensro', - }, - { - '-host' => 'ens-staging2', + '-host' => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, '-user' => 'ensro', }, ); diff --git a/misc-scripts/xref_mapping/XrefParser/RFAMParser.pm b/misc-scripts/xref_mapping/XrefParser/RFAMParser.pm index 7b036fdb1391f351f8637a53eeb6478afb240110..42556d589609712074f75537cb64409f7ab152e4 100644 --- a/misc-scripts/xref_mapping/XrefParser/RFAMParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/RFAMParser.pm @@ -88,13 +88,10 @@ sub run_script { } else { $registry->load_registry_from_multiple_dbs( { - '-host' => 'ens-staging1', + '-host' => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, '-user' => 'ensro', }, - { - '-host' => 'ens-staging2', - '-user' => 'ensro', - }, ); $dba = $registry->get_DBAdaptor($species_name, 'core'); } diff --git a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm index fdda1a9d2f47d28a02c528190024b6f4bb7b2257..7349eda3be71976ac7d0f2c2a35dbaedf2cef17b 100644 --- a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm @@ -138,13 +138,10 @@ sub run_script { # Else, database should be on staging $registry->load_registry_from_multiple_dbs( { - -host => 'ens-staging1', + -host => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, -user => 'ensro', }, - { - -host => 'ens-staging2', - -user => 'ensro', - }, ); $core_dba = $registry->get_DBAdaptor($species_name,'core'); } @@ -163,13 +160,10 @@ sub run_script { # Else database should be on staging $registry->load_registry_from_multiple_dbs( { - -host => 'ens-staging1', + -host => 'mysql-ensembl-mirror.ebi.ac.uk', + '-port' => 4240, -user => 'ensro', }, - { - -host => 'ens-staging2', - -user => 'ensro', - }, ); $otherf_dba = $registry->get_DBAdaptor($species_name, 'otherfeatures') if !defined($ofhost); if (defined $otherf_dba) { $otherf_dba->dnadb($core_dba); }