From 647667d97275c0cd10d0e4bd4d8ca7e02d679bb1 Mon Sep 17 00:00:00 2001
From: Monika Komorowska <mk8@sanger.ac.uk>
Date: Mon, 7 Nov 2011 11:56:59 +0000
Subject: [PATCH] Changes to _slice_fetch: simpify SQL if slice is an SNP -
only 1bp long. Functionality suggested by Ensembl Genomes, used when building
a variation DB. New flag: start_equals_end which controls the simplified sql
for 1bp slice.
---
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
index 4ae77b004e..313214135a 100644
--- a/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
@@ -87,7 +87,7 @@ sub new {
to true sub _slice_fetch will use a simplified sql to retrieve 1bp slices.
Returntype : boolean
Exceptions : none
- Caller : Pipeline
+ Caller : EnsemblGenomes variation DB build
Status : Stable
=cut
--
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