diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm index 5c2f5f4bb04291bba2d7ff00674025cec5e2f04b..90997234f8ab5a05bc4867e00e21c29b9f5e39fd 100644 --- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm +++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm @@ -149,13 +149,8 @@ sub get_species_id_from_species_name{ sub get_set_lists{ my ($self) = @_; -# return [["method1",["homo_sapiens","RefSeq"],["homo_sapiens","Uniprot/SWISSPROT"]], -# ["method2",[$self->species,"*"]], -# ["method3",["*","*"]]]; - - return [["ExonerateGappedBest1", ["homo_sapiens","Uniprot/SWISSPROT"]]]; -#return [["ExonerateGappedBest1", ["homo_sapiens","RefSeq"]]]; -# return [["ExonerateBest1",["*","*"]]]; +# return [["ExonerateGappedBest1", ["homo_sapiens","Uniprot/SWISSPROT"]]]; +return [["ExonerateGappedBest1", ["homo_sapiens","*"]]]; } @@ -1017,6 +1012,7 @@ sub dump_xrefs { } # get source names; + #print STDERR $source_sql."\n"; my $source_sql = "SELECT name, release, source_id FROM source WHERE source_id $source_id_str"; my $source_sth = $xref_dbi->prepare($source_sql); #print STDERR $source_sql."\n";