From 6544e72d6b4c3ddd09458dbee5558813513f3358 Mon Sep 17 00:00:00 2001 From: Glenn Proctor <gp1@sanger.ac.uk> Date: Fri, 1 Apr 2005 13:31:07 +0000 Subject: [PATCH] Added source for elegans that uses WormbaseDatabseStableIDParser. --- misc-scripts/xref_mapping/sql/populate_metadata.sql | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index 278b9ac273..997a6dbce9 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -156,7 +156,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date ### Zebrafish ## uniprot -#until zebra fish has it's own .SPC file parse all. +#until zebra fish has its own .SPC file parse all. #INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7955, 'ftp://ftp.ebi.ac.uk/pub/databases/SPproteomes/swissprot_files/proteomes/7955.SPC', '', now(), now(), "UniProtParser"); INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7955, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', '', now(), now(), "UniProtParser"); @@ -300,9 +300,13 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 6239,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 6239,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser"); -## wormBase +## WormBase + INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2400, 6239, 'ftp://ftp.sanger.ac.uk/pub/databases/wormpep/wormpep140/wormpep.table140', '', now(), now(), "WormPepParser"); +## Stable ID xref transfer - note use of WormbaseDatabaseStableIDParser +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2400, 6239, 'mysql:ecs4:3350:glenn_elegans_140:ensro', '', now(), now(), "WormbaseDatabaseStableIDParser"); + # -------------------------------------------------------------------------------- -- GitLab