From 6546fb88266df0704c272a9de86385eb51773313 Mon Sep 17 00:00:00 2001 From: Ian Longden <ianl@sanger.ac.uk> Date: Wed, 4 Nov 2009 14:50:51 +0000 Subject: [PATCH] New order fro prioritys --- misc-scripts/xref_mapping/xref_config.ini | 34 +++++++++++------------ 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index f5c4f1df7b..03acc21786 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c # used by #02 name = HGNC download = N -order = 30 +order = 19 priority = 1 prio_descr = ensembl_manual parser = HGNCParser @@ -1104,19 +1104,19 @@ data_uri = [source HGNC::homo_sapiens#08] # used by #02 name = HGNC -download = N -order = 30 +download = Y +order = 18 priority = 100 prio_descr = desc_only parser = HGNCParser release_uri = -data_uri = +data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr [source HGNC::homo_sapiens] # Used by homo_sapiens name = HGNC download = Y -order = 30 +order = 19 priority = 4 prio_descr = havana parser = HGNC_ENSTParser @@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega [source HGNC::homo_sapiens#02] # Used by homo_sapiens name = HGNC -download = Y -order = 29 +download = N +order = 19 priority = 3 prio_descr = entrezgene_manual parser = HGNCParser release_uri = -data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr +data_uri = [source HGNC::homo_sapiens#03] # Used by #02 name = HGNC download = N -order = 30 +order = 19 priority = 5 prio_descr = refseq_manual parser = HGNCParser @@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG # used by #02 which produces HGNC refseq and entrezgene types name = HGNC download = N -order = 30 +order = 19 priority = 6 prio_descr = entrezgene_mapped parser = HGNCParser @@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG # used by #02 which produces HGNC refseq and entrezgene types name = HGNC download = N -order = 30 +order = 19 priority = 7 prio_descr = refseq_mapped parser = HGNCParser @@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc # Used by homo_sapiens name = RefSeq_dna download = Y -order = 25 +order = 17 priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser @@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human, # Used by homo_sapiens name = RefSeq_dna download = Y -order = 20 +order = 15 priority = 2 prio_descr = refseq parser = RefSeqParser @@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn # Used by mus_musculus name = RefSeq_dna download = Y -order = 20 +order = 15 priority = 2 prio_descr = refseq parser = RefSeqParser @@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f # Used by mus_musculus name = RefSeq_dna download = Y -order = 25 +order = 17 priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser @@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g # Used by homo_sapiens name = RefSeq_peptide download = Y -order = 20 +order = 15 priority = 1 prio_descr = parser = RefSeqGPFFParser @@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens source = InterproGO::MULTI source = HGNC::homo_sapiens source = HGNC::homo_sapiens#01 -source = HGNC::homo_sapiens#02 +source = HGNC::homo_sapiens#08 source = IMGT/GENE_DB::homo_sapiens source = IPI::homo_sapiens source = Interpro::MULTI -- GitLab