From 6558f5cc8f45295181bffbfe92eeb6fee69f77e5 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 24 May 2011 14:27:40 +0000
Subject: [PATCH] print the number of synonyms added too as this is usefull
---
misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm b/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
index 65cebda253..9d61f80f28 100644
--- a/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
@@ -373,6 +373,7 @@ GSQL
# Transfer data for synonym and set xref database xrefs to dumped.
if(@xref_list){
+ my $syn_count = 0;
my $syn_sql = "select xref_id, synonym from synonym where xref_id in(".join(", ",@xref_list).")";
my $syn_sth = $self->xref->dbc->prepare($syn_sql);
$syn_sth->execute();
@@ -380,10 +381,12 @@ GSQL
my ($xref_id, $syn);
$syn_sth->bind_columns(\$xref_id, \$syn);
while($syn_sth->fetch()){
- $add_syn_sth->execute(($xref_id+$xref_offset), $syn)
+ $add_syn_sth->execute(($xref_id+$xref_offset), $syn);
+ $syn_count++;
}
$syn_sth->finish;
+ print "\tadded $syn_count synonyms\n" if($syn_count);
my $xref_dumped_sth = $self->xref->dbc->prepare("update xref set dumped = 'MAPPED' where xref_id in (".join(", ",@xref_list).")");
$xref_dumped_sth->execute() || die "Could not set dumped status";
$xref_dumped_sth->finish;
--
GitLab