From 661a3407854422fdaf884feefdf2f3129fee39c5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Mon, 1 Jun 2009 10:10:05 +0000
Subject: [PATCH] Add adaptor for Sequence Ontology (SO) terms.
---
modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm | 67 ++++++++++++++++++++++
1 file changed, 67 insertions(+)
create mode 100644 modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm
diff --git a/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm
new file mode 100644
index 0000000000..953daa233c
--- /dev/null
+++ b/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm
@@ -0,0 +1,67 @@
+=head1 LICENSE
+
+ Copyright (c) 1999-2009 The European Bioinformatics Institute and
+ Genome Research Limited. All rights reserved.
+
+ This software is distributed under a modified Apache license.
+ For license details, please see
+
+ http://www.ensembl.org/info/about/code_licence.html
+
+=head1 CONTACT
+
+ Please email comments or questions to the public Ensembl
+ developers list at <ensembl-dev@ebi.ac.uk>.
+
+ Questions may also be sent to the Ensembl help desk at
+ <helpdesk@ensembl.org>.
+
+=cut
+
+=head1 NAME
+
+Bio::EnsEMBL::DBSQL::SOTermAdaptor
+
+=head1 DESCRIPTION
+
+A specialization of Bio::EnsEMBL::DBSQL::OntologyTermAdaptor,
+specifically for Sequence ontology (SO) terms. See the
+documentation of Bio::EnsEMBL::DBSQL::OntologyTermAdaptor for
+further information.
+
+=head1 METHODS
+
+=cut
+
+package Bio::EnsEMBL::DBSQL::SOTermAdaptor;
+
+use strict;
+use warnings;
+
+use base qw( Bio::EnsEMBL::DBSQL::OntologyTermAdaptor );
+
+=head2 new
+
+ Arg [1] : Bio::EnsEMBL::DBSQL::DBAdaptor
+ Argument required for parent class
+ Bio::EnsEMBL::DBSQL::BaseAdaptor.
+
+ Description : Creates an ontology term adaptor for SO terms.
+
+ Example :
+
+ my $go_adaptor = Bio::EnsEMBL::DBSQL::SOTermAdaptor->new( $dba );
+
+ Return type : Bio::EnsEMBL::DBSQL::SOTermAdaptor
+
+=cut
+
+sub new {
+ my ( $proto, $dba ) = @_;
+
+ my $this = $proto->SUPER::new( $dba, 'SO' );
+
+ return $this;
+}
+
+1;
--
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