From 6773339c1945f1b02fc1b03591b80eb415222eee Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Tue, 7 Feb 2017 11:30:48 +0000
Subject: [PATCH] add new staging port, not 3306 any more
---
.../xref_mapping/XrefParser/curated_transcriptParser.pm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm b/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm
index e6e2836d2d..a2839ccf14 100644
--- a/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm
@@ -127,6 +127,7 @@ sub run_script {
$reg->load_registry_from_db(
-host => $host,
-user => $user,
+ -port => 4519,
-species => $species_name);
$vega_dbc = $reg->get_adaptor($species_name,"vega","slice");
@@ -152,6 +153,7 @@ sub run_script {
$reg->load_registry_from_db(
-host => $host,
-user => $user,
+ -port => 4519,
-species => $species_name);
$core_dbc = $reg->get_adaptor($species_name,"core","slice");
--
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