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Unverified Commit 6b64a71c authored by Marek Szuba's avatar Marek Szuba Committed by GitHub
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Merge pull request #396 from Ensembl/e98_version_bump 

Release-98 version bump
parents 1d07af8d 082c2055
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Showing with 200 additions and 195 deletions
modules/Bio/EnsEMBL/ApiVersion.pm
View file @ 6b64a71c
......@@ -56,7 +56,7 @@ use base qw( Exporter );
our @EXPORT = qw( software_version );
my $API_VERSION = 97;
my $API_VERSION = 98;
sub software_version { return $API_VERSION }
......
modules/t/test-genome-DBs/circ/core/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:53 2019
-- Created on Mon Jun 17 16:51:33 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/circ/core/meta.txt
View file @ 6b64a71c
......@@ -39,7 +39,7 @@
95 \N patch patch_83_84_c.sql|protein_feature_unique
96 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core
2 \N schema_version 97
2 \N schema_version 98
8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1
......@@ -131,3 +131,4 @@
131 \N patch patch_96_97_c.sql|rnaproduct_tables
132 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
133 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
134 \N patch patch_97_98_a.sql|schema_version
modules/t/test-genome-DBs/circ/core/table.sql
View file @ 6b64a71c
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=134 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=135 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:56 2019
-- Created on Mon Jun 17 16:51:37 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
View file @ 6b64a71c
1 \N schema_version 97
1 \N schema_version 98
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -110,3 +110,4 @@
177 \N patch patch_96_97_c.sql|rnaproduct_tables
178 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
179 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
180 \N patch patch_97_98_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:59 2019
-- Created on Mon Jun 17 16:51:40 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt
View file @ 6b64a71c
1 \N schema_version 97
1 \N schema_version 98
2 1 assembly.default NCBI34
33 1 species.classification Chordata
32 1 species.classification Vertebrata
......@@ -110,3 +110,4 @@
159 \N patch patch_96_97_c.sql|rnaproduct_tables
160 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
161 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
162 \N patch patch_97_98_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/empty/table.sql
View file @ 6b64a71c
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=162 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=163 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:02 2019
-- Created on Mon Jun 17 16:51:43 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/homo_sapiens/patch/meta.txt
View file @ 6b64a71c
1 \N schema_version 97
1 \N schema_version 98
2014 1 species.classification Haplorrhini
40 1 assembly.default GRCh37
41 1 assembly.date 2009-02
......@@ -115,3 +115,4 @@
2122 \N patch patch_96_97_c.sql|rnaproduct_tables
2123 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
2124 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
2125 \N patch patch_97_98_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/patch/table.sql
View file @ 6b64a71c
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2125 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=2126 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/homo_sapiens/variation/meta.txt
View file @ 6b64a71c
1 \N schema_type variation
2 \N schema_version 97
2 \N schema_version 98
3 \N patch patch_84_85_a.sql|schema version
4 \N patch patch_84_85_b.sql|create sample_synonym
5 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
......@@ -42,3 +42,4 @@
42 \N patch patch_96_97_a.sql|schema version
43 \N patch patch_96_97_b.sql|move ancestral allele column to variation_feature
44 \N patch patch_96_97_c.sql|add an unique index on the name column
45 \N patch patch_97_98_a.sql|schema version
modules/t/test-genome-DBs/homo_sapiens/variation/table.sql
View file @ 6b64a71c
......@@ -186,7 +186,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=45 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=46 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
......
modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:03 2019
-- Created on Mon Jun 17 16:51:44 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/mapping/core/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:05 2019
-- Created on Mon Jun 17 16:51:47 2019
--
BEGIN TRANSACTION;
......
modules/t/test-genome-DBs/mapping/core/meta.txt
View file @ 6b64a71c
1 \N schema_version 97
1 \N schema_version 98
2 1 assembly.default MULTIMAP
3 1 species.taxonomy_id 1
4 1 assembly.mapping chromosome:MULTIMAP#contig
......@@ -71,3 +71,4 @@
164 \N patch patch_96_97_c.sql|rnaproduct_tables
165 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
166 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
167 \N patch patch_97_98_a.sql|schema_version
modules/t/test-genome-DBs/mapping/core/table.sql
View file @ 6b64a71c
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=167 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=168 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
modules/t/test-genome-DBs/multi/compara/SQLite/table.sql
View file @ 6b64a71c
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:07 2019
-- Created on Mon Jun 17 16:51:50 2019
--
BEGIN TRANSACTION;
......@@ -292,8 +292,7 @@ CREATE TABLE "gene_tree_root_attr" (
"lca_node_id" integer,
"taxonomic_coverage" float,
"ratio_species_genes" float,
"model_name" varchar(40),
"division" varchar(10)
"model_name" varchar(40)
);
--
......
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