Unverified Commit 6b64a71c authored by Marek Szuba's avatar Marek Szuba Committed by GitHub
Browse files

Merge pull request #396 from Ensembl/e98_version_bump

Release-98 version bump
parents 1d07af8d 082c2055
...@@ -56,7 +56,7 @@ use base qw( Exporter ); ...@@ -56,7 +56,7 @@ use base qw( Exporter );
our @EXPORT = qw( software_version ); our @EXPORT = qw( software_version );
my $API_VERSION = 97; my $API_VERSION = 98;
sub software_version { return $API_VERSION } sub software_version { return $API_VERSION }
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:53 2019 -- Created on Mon Jun 17 16:51:33 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
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...@@ -39,7 +39,7 @@ ...@@ -39,7 +39,7 @@
95 \N patch patch_83_84_c.sql|protein_feature_unique 95 \N patch patch_83_84_c.sql|protein_feature_unique
96 \N patch patch_83_84_d.sql|longer_synonym 96 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core 1 \N schema_type core
2 \N schema_version 97 2 \N schema_version 98
8 1 assembly.accession GCA_000292705.1 8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08 10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1 7 1 assembly.default GCA_000292705.1
...@@ -131,3 +131,4 @@ ...@@ -131,3 +131,4 @@
131 \N patch patch_96_97_c.sql|rnaproduct_tables 131 \N patch patch_96_97_c.sql|rnaproduct_tables
132 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 132 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
133 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 133 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
134 \N patch patch_97_98_a.sql|schema_version
...@@ -490,7 +490,7 @@ CREATE TABLE `meta` ( ...@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`), PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`) KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=134 DEFAULT CHARSET=latin1; ) ENGINE=MyISAM AUTO_INCREMENT=135 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` ( CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '', `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:56 2019 -- Created on Mon Jun 17 16:51:37 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
......
1 \N schema_version 97 1 \N schema_version 98
2 1 assembly.default NCBI34 2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606 3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens 26 1 species.classification Homo sapiens
...@@ -110,3 +110,4 @@ ...@@ -110,3 +110,4 @@
177 \N patch patch_96_97_c.sql|rnaproduct_tables 177 \N patch patch_96_97_c.sql|rnaproduct_tables
178 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 178 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
179 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 179 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
180 \N patch patch_97_98_a.sql|schema_version
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:03:59 2019 -- Created on Mon Jun 17 16:51:40 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
......
1 \N schema_version 97 1 \N schema_version 98
2 1 assembly.default NCBI34 2 1 assembly.default NCBI34
33 1 species.classification Chordata 33 1 species.classification Chordata
32 1 species.classification Vertebrata 32 1 species.classification Vertebrata
...@@ -110,3 +110,4 @@ ...@@ -110,3 +110,4 @@
159 \N patch patch_96_97_c.sql|rnaproduct_tables 159 \N patch patch_96_97_c.sql|rnaproduct_tables
160 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 160 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
161 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 161 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
162 \N patch patch_97_98_a.sql|schema_version
...@@ -490,7 +490,7 @@ CREATE TABLE `meta` ( ...@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`), PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`) KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=162 DEFAULT CHARSET=latin1; ) ENGINE=MyISAM AUTO_INCREMENT=163 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` ( CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '', `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:02 2019 -- Created on Mon Jun 17 16:51:43 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
......
1 \N schema_version 97 1 \N schema_version 98
2014 1 species.classification Haplorrhini 2014 1 species.classification Haplorrhini
40 1 assembly.default GRCh37 40 1 assembly.default GRCh37
41 1 assembly.date 2009-02 41 1 assembly.date 2009-02
...@@ -115,3 +115,4 @@ ...@@ -115,3 +115,4 @@
2122 \N patch patch_96_97_c.sql|rnaproduct_tables 2122 \N patch patch_96_97_c.sql|rnaproduct_tables
2123 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 2123 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
2124 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 2124 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
2125 \N patch patch_97_98_a.sql|schema_version
...@@ -490,7 +490,7 @@ CREATE TABLE `meta` ( ...@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`), PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`) KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2125 DEFAULT CHARSET=latin1; ) ENGINE=MyISAM AUTO_INCREMENT=2126 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` ( CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '', `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
1 \N schema_type variation 1 \N schema_type variation
2 \N schema_version 97 2 \N schema_version 98
3 \N patch patch_84_85_a.sql|schema version 3 \N patch patch_84_85_a.sql|schema version
4 \N patch patch_84_85_b.sql|create sample_synonym 4 \N patch patch_84_85_b.sql|create sample_synonym
5 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym 5 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
...@@ -42,3 +42,4 @@ ...@@ -42,3 +42,4 @@
42 \N patch patch_96_97_a.sql|schema version 42 \N patch patch_96_97_a.sql|schema version
43 \N patch patch_96_97_b.sql|move ancestral allele column to variation_feature 43 \N patch patch_96_97_b.sql|move ancestral allele column to variation_feature
44 \N patch patch_96_97_c.sql|add an unique index on the name column 44 \N patch patch_96_97_c.sql|add an unique index on the name column
45 \N patch patch_97_98_a.sql|schema version
...@@ -186,7 +186,7 @@ CREATE TABLE `meta` ( ...@@ -186,7 +186,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`), PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`) KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=45 DEFAULT CHARSET=latin1; ) ENGINE=MyISAM AUTO_INCREMENT=46 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` ( CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL, `table_name` varchar(40) NOT NULL,
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:03 2019 -- Created on Mon Jun 17 16:51:44 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:05 2019 -- Created on Mon Jun 17 16:51:47 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
......
1 \N schema_version 97 1 \N schema_version 98
2 1 assembly.default MULTIMAP 2 1 assembly.default MULTIMAP
3 1 species.taxonomy_id 1 3 1 species.taxonomy_id 1
4 1 assembly.mapping chromosome:MULTIMAP#contig 4 1 assembly.mapping chromosome:MULTIMAP#contig
...@@ -71,3 +71,4 @@ ...@@ -71,3 +71,4 @@
164 \N patch patch_96_97_c.sql|rnaproduct_tables 164 \N patch patch_96_97_c.sql|rnaproduct_tables
165 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 165 \N patch patch_96_97_d.sql|add_object_type_rnaproduct
166 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 166 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
167 \N patch patch_97_98_a.sql|schema_version
...@@ -490,7 +490,7 @@ CREATE TABLE `meta` ( ...@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`), PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`) KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=167 DEFAULT CHARSET=latin1; ) ENGINE=MyISAM AUTO_INCREMENT=168 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` ( CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '', `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
-- --
-- Created by SQL::Translator::Producer::SQLite -- Created by SQL::Translator::Producer::SQLite
-- Created on Tue Apr 2 16:04:07 2019 -- Created on Mon Jun 17 16:51:50 2019
-- --
BEGIN TRANSACTION; BEGIN TRANSACTION;
...@@ -292,8 +292,7 @@ CREATE TABLE "gene_tree_root_attr" ( ...@@ -292,8 +292,7 @@ CREATE TABLE "gene_tree_root_attr" (
"lca_node_id" integer, "lca_node_id" integer,
"taxonomic_coverage" float, "taxonomic_coverage" float,
"ratio_species_genes" float, "ratio_species_genes" float,
"model_name" varchar(40), "model_name" varchar(40)
"division" varchar(10)
); );
-- --
......
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