From 6d5d994d04f9928a7df690c029a3f828ead7b0fa Mon Sep 17 00:00:00 2001
From: Graham McVicker <mcvicker@sanger.ac.uk>
Date: Wed, 28 Jan 2004 19:44:31 +0000
Subject: [PATCH] fixed Danio converter I hope. Need to test still.
---
misc-scripts/surgery/SeqStoreConverter/DanioRerio.pm | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/misc-scripts/surgery/SeqStoreConverter/DanioRerio.pm b/misc-scripts/surgery/SeqStoreConverter/DanioRerio.pm
index db0d634888..705b78c34f 100644
--- a/misc-scripts/surgery/SeqStoreConverter/DanioRerio.pm
+++ b/misc-scripts/surgery/SeqStoreConverter/DanioRerio.pm
@@ -200,14 +200,6 @@ sub create_seq_regions {
#insert into seq_region table
$insert_sth->execute($name, $cs_id, $length);
#copy old/new mapping into temporary table
-
- #avoid trying to add the same chromosome id twice into the mappings
- #not all supercontigs make up 'supercontigs' in the chromosome table,
- #some were used to construct chromosomes, and we don't want these ids.
- if(!$chr_id_added{$old_id}) {
- $tmp_chr_insert_sth->execute($old_id, $insert_sth->{'mysql_insertid'});
- $chr_id_added{$old_id} = 1;
- }
$tmp_supercontig_insert_sth->execute($name,$insert_sth->{'mysql_insertid'});
}
@@ -216,7 +208,6 @@ sub create_seq_regions {
$tmp_supercontig_insert_sth->finish();
$tmp_clone_insert_sth->finish();
$insert_sth->finish();
-
}
--
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