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+-- MySQL dump 10.11
+--
+-- Host: ens-staging1 Database: ensembl_production
+-- ------------------------------------------------------
+-- Server version 5.1.39
+/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
+/*!40103 SET TIME_ZONE='+00:00' */;
+/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
+/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
+/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
+/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
+
+--
+-- Table structure for table `analysis_description`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `analysis_description` (
+ `analysis_description_id` int(10) unsigned NOT NULL,
+ `logic_name` varchar(128) NOT NULL,
+ `description` text,
+ `display_label` varchar(256) NOT NULL,
+ PRIMARY KEY (`analysis_description_id`),
+ UNIQUE KEY `logic_name_idx` (`logic_name`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `analysis_description`
+--
+-- ORDER BY: `analysis_description_id`
+
+INSERT INTO `analysis_description` VALUES (1,'ab_initio_repeatmask','Interspersed repeats and low complexity sequence identified by <a rel=\"external\" href=\"http://www.repeatmasker.org/\">RepeatMasker</a> using ab initio repeat profiles specific to the species.','Repeats (Recon)');
+INSERT INTO `analysis_description` VALUES (2,'assembly_patch_ensembl','For patches added to the genome assembly by the <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/index.shtml\">GRC</a>, transcripts were annotated by aligning human cDNA sequences to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate\'s</a> cdna2genome model, which utilises annotation identifying the coding regions of the cDNA sequences.','Ensembl assembly patch gene');
+INSERT INTO `analysis_description` VALUES (3,'bacends','Bacterial Artificial Chromosome (end sequences) of library clones that were used in the sequencing project are aligned to the genome using <a rel=\"external\" href=\"http://www.sanger.ac.uk/Software/analysis/SSAHA2/\">SSAHA2</a>.','BAC ends');
+INSERT INTO `analysis_description` VALUES (4,'bgi_augustus_geneset','Gene predictions generated by the BGI using Augustus.','Augustus BGI predictions.');
+INSERT INTO `analysis_description` VALUES (5,'bgi_genewise_geneset','Gene predictions generated by the BGI using Genewise to align human and dog Ensembl translations.','Genewise BGI predictions.');
+INSERT INTO `analysis_description` VALUES (6,'bgi_genscan_geneset','Gene predictions generated by the BGI using <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc\">Genscan</a>.','Genscan BGI predictions.');
+INSERT INTO `analysis_description` VALUES (7,'blastmirna','Positions of miRNAs along the genome are shown. A BLASTN of genomic sequence regions against <a rel=\"external\" href=\"http://microrna.sanger.ac.uk\">miRBase</a> sequences is performed, and hits are clustered and filtered by E value. Aligned genomic sequence is then checked for possible secondary structure using RNAFold. If evidence is found that the genomic sequence could form a stable hairpin structure the locus is used to create a miRNA gene model. The resulting BLAST hit is used as supporting evidence for the miRNA gene. See <a href=\"http://www.ensembl.org/info/docs/genebuild/ncrna.html\" class=\"cp-external\">article</a>.','miRBase miRNA');
+INSERT INTO `analysis_description` VALUES (8,'blastprodom','NCBI-BlastP search against ProDom families','blastprodom');
+INSERT INTO `analysis_description` VALUES (9,'brepepp','Caenorhabditis brenneri proteins aligned by WU-BlastP','BrepepP');
+INSERT INTO `analysis_description` VALUES (10,'brepepx','Caenorhabditis brenneri proteins aligned by WU-BlastX','BrepepX');
+INSERT INTO `analysis_description` VALUES (11,'brigpepp','C. briggsae proteins aligned by WU-BlastP','brigpepP');
+INSERT INTO `analysis_description` VALUES (12,'brigpepx','C. briggsae proteins aligned by WU-BlastX','brigpepX');
+INSERT INTO `analysis_description` VALUES (13,'caenorhabditis_est','Caenorhabditis ESTs aligned to the genome using BLAT (excluding C.elegans)','caenorhabditis EST');
+INSERT INTO `analysis_description` VALUES (14,'caenorhabditis_mrna','Caenorhabditis ESTs aligned to the genome using BLAT (excluding C.elegans)','caenorhabditis cDNA');
+INSERT INTO `analysis_description` VALUES (15,'ccds','Protein coding sequences agreed upon by the Consensus Coding Sequence project, or <a href=\"http://www.ensembl.org/info/docs/genebuild/ccds.html\" class=\"cp-external\">CCDS</a>.','CCDS set');
+INSERT INTO `analysis_description` VALUES (16,'ccds_import','Protein coding sequences agreed upon by the Consensus Coding Sequence project, or <a href=\"http://www.ensembl.org/info/docs/genebuild/ccds.html\" class=\"cp-external\">CCDS</a>.','CCDS set');
+INSERT INTO `analysis_description` VALUES (17,'cdm','Tetraodon cDNAs were prepared from 7 adult tissues by Genoscope, and aligned using BLAST and EST2GENOME <a rel=\"externa\" href=\"http://www.ncbi.nlm.nih.gov/pubmed/9283765?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum\">(R. Mott, Comput Appl Biosci. 1997 13:477-8)</a>.','Tetraodon cDNA');
+INSERT INTO `analysis_description` VALUES (18,'cdna_exonerate','cDNA sequences are mapped onto the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','cDNA');
+INSERT INTO `analysis_description` VALUES (19,'cdna_update','The latest set of cDNAs for this species from the European Nucleotide Archive (was EMBL) and NCBI RefSeq were aligned to the current genome using <a rel=\"external\" href=\"http://www.ebi.ac.uk/~guy/exonerate/\">Exonerate</a>.','RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (20,'celegans_est','Caenorhabditis elegans \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.elegans EST');
+INSERT INTO `analysis_description` VALUES (21,'celegans_mrna','Caenorhabditis elegans mRNA are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.elegans cDNA');
+INSERT INTO `analysis_description` VALUES (22,'chicken_cdna','Chicken cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Chicken cDNA');
+INSERT INTO `analysis_description` VALUES (23,'chicken_est','Chicken \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Chicken EST');
+INSERT INTO `analysis_description` VALUES (24,'chicken_protein','Chicken protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Chicken prot.');
+INSERT INTO `analysis_description` VALUES (25,'chicken_repeatmask','<a rel=\"external\" href=\"http://www.repeatmasker.org\">RepeatMasker</a> is used to find repeats and low-complexity sequences using a chicken repeat library. This track usually shows repeats alone (not low-complexity sequences).','Repeats (Chicken)');
+INSERT INTO `analysis_description` VALUES (26,'chimp_cdna','Pan troglodytes cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Chimpanzee cDNA');
+INSERT INTO `analysis_description` VALUES (27,'chimp_est','Pan troglodytes \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Chimpanzee EST');
+INSERT INTO `analysis_description` VALUES (28,'chimp_human_protein','Human protein sequence aligned to the chimp genome by projection or by using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','human prot.');
+INSERT INTO `analysis_description` VALUES (29,'chimp_protein','Pan troglodyes protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Chimpanzee prot.');
+INSERT INTO `analysis_description` VALUES (30,'cint_cdna','Ciona intestinalis cDNA sequences from the <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">Ghost Database</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.intestinalis cDNA');
+INSERT INTO `analysis_description` VALUES (31,'cint_est','Ciona intestinalis \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> and the <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">Ghost Database</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.intestinalis EST');
+INSERT INTO `analysis_description` VALUES (32,'cow_cdna','Cow cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Cow cDNA');
+INSERT INTO `analysis_description` VALUES (33,'cow_est','Cow \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Cow EST');
+INSERT INTO `analysis_description` VALUES (34,'cow_protein','Cow protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Cow prot.');
+INSERT INTO `analysis_description` VALUES (35,'cpg','CpG islands are regions of nucleic acid sequence containing a high number of adjacent cytosine guanine pairs (along one strand). Usually unmethylated, they are associated with promoters and regulatory regions. They are determined from the genomic sequence using a program written by G. Miklem, similar to <a rel=\"external\" href=\"http://emboss.sourceforge.net/apps/cvs/emboss/apps/newcpgreport.html\">newcpgreport</a> in the EMBOSS package.','CpG islands');
+INSERT INTO `analysis_description` VALUES (36,'cyt','Cytokine gene, structure manually curated by Genoscope,','Cytokine gene');
+INSERT INTO `analysis_description` VALUES (37,'deletion','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Deletion');
+INSERT INTO `analysis_description` VALUES (38,'dog_ensembl_proteins','Selected Ensembl-predicted dog peptide sequences aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Dog Ensembl prot.');
+INSERT INTO `analysis_description` VALUES (39,'dog_est','Dog \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Dog EST');
+INSERT INTO `analysis_description` VALUES (40,'dog_protein','Dog proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Dog protein');
+INSERT INTO `analysis_description` VALUES (41,'drosophila_cdna_all','Drosophila melanogaster cDNA sequences from <a rel=\"external\" href=\"http://www.fruitfly.org\">BDGP</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fly cDNA');
+INSERT INTO `analysis_description` VALUES (42,'drosophila_est','Drosophila melanogaster \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fly EST');
+INSERT INTO `analysis_description` VALUES (43,'drosophila_gold_cdna','Drosophila melanogaster cDNA sequences from the Drosophila <a rel=\"external\" href=\"http://www.fruitfly.org\">Gold Collection</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fly gold cDNA');
+INSERT INTO `analysis_description` VALUES (44,'dust','Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent \'sticky\' regions from determining false hits.','Low complexity (Dust)');
+INSERT INTO `analysis_description` VALUES (45,'eg3_fr','Evolutionary conserved regions (\"Ecores\") are inferred from alignments of the Fugu and Tetraodon genomes by <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets (\"Ecotigs\")','Takifugu Ecores');
+INSERT INTO `analysis_description` VALUES (46,'eg3_gg','Evolutionary conserved regions(\"Ecores\") are inferred from alignments of the Chicken and Tetraodon genomes by <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets (\"Ecotigs\")','Chicken Ecores');
+INSERT INTO `analysis_description` VALUES (47,'eg3_hs','Evolutionary conserved regions (\"Ecores\") are inferred from alignments of the Human and Tetraodon genomes by <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets (\"Ecotigs\")','Human Ecores');
+INSERT INTO `analysis_description` VALUES (48,'eg3_mm','Evolutionary conserved regions (\"Ecores\") are inferred from alignments of the Mouse and Tetraodon genomes by <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets (\"Ecotigs\")','Mouse Ecores');
+INSERT INTO `analysis_description` VALUES (49,'eg3_rn','Evolutionary conserved regions (\"Ecores\") are inferred from alignments of the Rat and Tetraodon genomes by <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish, H. Roest Crollius et al.,</a> and grouped into contiguous, consistent sets (\"Ecotigs\")','Rat Ecores');
+INSERT INTO `analysis_description` VALUES (50,'enhancer','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Enhancer');
+INSERT INTO `analysis_description` VALUES (51,'ensembl','Transcripts were annotated by the Ensembl <a href=\"http://www.ensembl.org/info/docs/genebuild/genome_annotation.html\" class=\"cp-external\">genebuild</a>.','Ensembl gene');
+INSERT INTO `analysis_description` VALUES (52,'ensembl_chicken_protein','Chicken protein sequences from <a rel=\"external\" href=\"http://www.ensembl.org\">Ensembl</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/ 6/31\">Exonerate</a>.','Ensembl chicken protein');
+INSERT INTO `analysis_description` VALUES (53,'ensembl_havana_gene','Gene containing both Ensembl genebuild transcripts and <a rel=\"external\" href=\"http://vega.sanger.ac.uk/index.html\">Havana</a> manual curation, see <a href=\"http://www.ensembl.org/info/docs/genebuild/genome_annotation.html\" class=\"cp-external\">article</a>.','Ensembl/Havana merge gene');
+INSERT INTO `analysis_description` VALUES (54,'ensembl_havana_transcript','Transcript where the Ensembl genebuild transcript and the <a rel=\"external\" href=\"http://vega.sanger.ac.uk/index.html\">Vega</a> manual annotation have the same sequence, for every base pair. See <a href=\"http://www.ensembl.org/info/docs/genebuild/genome_annotation.html\" class=\"cp-external\">article</a>.','Ensembl/Havana merge transcript');
+INSERT INTO `analysis_description` VALUES (55,'ensembl_ig_gene','Immunoglobulin (Ig) and T-cell receptor (TcR) genes were imported from the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT\">IMGT</a> database using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Ig/T-cell receptor gene');
+INSERT INTO `analysis_description` VALUES (56,'ensembl_projection','Genes were predicted by projecting human Ensembl transcripts through a BLASTZ DNA alignment to the human genome','Proj. human gene');
+INSERT INTO `analysis_description` VALUES (57,'eponine','Transcription start sites predicted by <a rel=\"external\" href=\"http://www.sanger.ac.uk/Users/td2/eponine/\">Eponine-TSS</a>.','TSS (Eponine)');
+INSERT INTO `analysis_description` VALUES (58,'est2genome_human','Alignment of human ESTs (expressed sequence tags) to the genome using the program <a rel=\"external\" href=\"http://emboss.sourceforge.net/apps/cvs/emboss/apps/est2genome.html\">Est2genome</a>. ESTs are from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a>','Human EST (EST2genome)');
+INSERT INTO `analysis_description` VALUES (59,'est2genome_mouse','Alignment of mouse ESTs (expressed sequence tags) to the genome using the program <a rel=\"external\" href=\"http://emboss.sourceforge.net/apps/cvs/emboss/apps/est2genome.html\">Est2genome</a>. ESTs are from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a>','Mouse EST (EST2genome)');
+INSERT INTO `analysis_description` VALUES (60,'est2genome_other','Alignment of non-human, non-mouse ESTs (expressed sequence tags) to the genome using the program <a rel=\"external\" href=\"http://emboss.sourceforge.net/apps/cvs/emboss/apps/est2genome.html\">Est2genome</a>. ESTs are from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a>','Other EST (EST2genome)');
+INSERT INTO `analysis_description` VALUES (61,'estgene','ESTs are mapped on the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>. Genes (including isoforms) are inferred using the <a rel=\"external\" href=\"http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=479129&rendertype=abstract\">Cluster-Merge algorithm</a>.','EST-based gene');
+INSERT INTO `analysis_description` VALUES (62,'est_3prim_savi','Ciona savignyi 3\' \'Expressed Sequence Tags\' (ESTs) from uncorrected <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">Ghost Database</a> data are aligned with <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.savignyi 3\' EST');
+INSERT INTO `analysis_description` VALUES (63,'est_5prim_savi','Ciona savignyi 3\' \'Expressed Sequence Tags\' (ESTs) from uncorrected <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">Ghost Database</a> data are aligned with <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.savignyi 5\' EST');
+INSERT INTO `analysis_description` VALUES (64,'est_bestn_3prim','3\' \'Expressed Sequence Tags\' (ESTs) are mapped on the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>, and the best hit is shown.','best hit 3\' EST');
+INSERT INTO `analysis_description` VALUES (65,'est_bestn_5prim','5\' \'Expressed Sequence Tags\' (ESTs) are mapped on the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>, and the best hit is shown.','best hit 5\' EST');
+INSERT INTO `analysis_description` VALUES (66,'est_embl','\'Expressed Sequence Tags\' (ESTs) from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> database are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','EMBL EST');
+INSERT INTO `analysis_description` VALUES (67,'est_exonerate','\'Expressed Sequence Tags\' (ESTs) are mapped onto the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','EST');
+INSERT INTO `analysis_description` VALUES (68,'exonerate_ig_gene','Immunoglobulin (Ig) and T-cell receptor (TcR) genes were imported from the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT\">IMGT</a> database using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Ig and TcR transcripts');
+INSERT INTO `analysis_description` VALUES (69,'expression_profile','imported expression profiles from WormBase','Expressionprofile');
+INSERT INTO `analysis_description` VALUES (70,'fantom_cage','These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel=\"external\" href=\"http://fantom.gsc.riken.go.jp/\">Riken Fantom</a> project and aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fantom CAGE tags');
+INSERT INTO `analysis_description` VALUES (71,'fantom_gis_pet','These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel=\"external\" href=\"http://fantom.gsc.riken.go.jp/\">Riken Fantom</a> project and aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fantom GIS ditags');
+INSERT INTO `analysis_description` VALUES (72,'fantom_gis_pet_raw','These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel=\"external\" href=\"http://fantom.gsc.riken.go.jp/\">Riken Fantom</a> project and aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','FANTOM GIS ditags raw');
+INSERT INTO `analysis_description` VALUES (73,'fantom_gsc_pet','These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel=\"external\" href=\"http://fantom.gsc.riken.go.jp/\">Riken Fantom</a> project and aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fantom GSC ditags');
+INSERT INTO `analysis_description` VALUES (74,'fantom_gsc_pet_raw','These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel=\"external\" href=\"http://fantom.gsc.riken.go.jp/\">Riken Fantom</a> project and aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Fantom GSC raw');
+INSERT INTO `analysis_description` VALUES (75,'fgenesh','Ab initio prediction of protein coding genes, based on the genomic sequence alone <a rel=\"external\" href=\"http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=10779491\">AA Salamov et al., Genome Res. 2000 4:516-22</a>.','FGENESH prediction');
+INSERT INTO `analysis_description` VALUES (76,'firstef','First Exon Finder (<a rel=\"external\" href=\"http://www.nature.com/ng/journal/v29/n4/full/ng780.html\">First EF</a>) predicts positions of the first exons of transcripts, both coding and non-coding, using the sequence to identify features such as CpG islands and promoter regions.','First EF');
+INSERT INTO `analysis_description` VALUES (77,'fish_protein','Fish proteins aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)','Fish protein');
+INSERT INTO `analysis_description` VALUES (78,'flybase','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','FlyBase feature');
+INSERT INTO `analysis_description` VALUES (79,'fosends','End sequences of Fosmid library clones used in the sequencing project aligned to the genome using <a rel=\"external\" href=\"http://www.sanger.ac.uk/Software/analysis/SSAHA2/\">SSAHA2</a>.','FOS ends');
+INSERT INTO `analysis_description` VALUES (80,'fosmid','Vancouver fosmids mapped to the C.elegans genome (available through GeneService)','fosmid');
+INSERT INTO `analysis_description` VALUES (81,'fugu_cdna','Takifugu cDNAs from <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/Genbank/\">Genbank</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Takifugu cDNA');
+INSERT INTO `analysis_description` VALUES (82,'fugu_est','Takifugu \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Takifugu EST');
+INSERT INTO `analysis_description` VALUES (83,'fugu_protein','Takifugu proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Takifugu prot.');
+INSERT INTO `analysis_description` VALUES (84,'gadflyp','FlyBase proteins aligned by WU-BlastP','GadflyP');
+INSERT INTO `analysis_description` VALUES (85,'gadflyx','FlyBase proteins aligned by WU-BlastX','GadflyX');
+INSERT INTO `analysis_description` VALUES (86,'gene3d','Gene3D analysis as of interpro_scan.pl','gene3d');
+INSERT INTO `analysis_description` VALUES (87,'genedensity','Gene density as calculated by <a rel=\"external\" href=\"http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl/misc-scripts/density_feature/gene_density_calc.pl?root=ensembl&view=markup\">gene_density_calc.pl</a>.','Genes (density)');
+INSERT INTO `analysis_description` VALUES (88,'genefinder','Ab initio prediction of protein coding genes by Genefinder (C. Wilson, L. Hilyer, and P. Green, unpublished).','Genefinder prediction');
+INSERT INTO `analysis_description` VALUES (89,'genscan','Ab initio prediction of protein coding genes by <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc\">Genscan</a>. The splice site models used are described in more detail in C. Burge, Modelling dependencies in pre-mRNA splicing signals. 1998 In Salzberg, S., Searls, D. and Kasif, S., eds. Computational Methods in Molecular Biology, Elsevier Science, Amsterdam, 127-163.','Genscan prediction');
+INSERT INTO `analysis_description` VALUES (90,'gid','Ab initio prediction of protein coding genes by <a rel=\"external\" href=\"http://www1.imim.es/software/geneid/\">Geneid</a>, with parameters customised for accuracy in Tetraodon sequences.','Geneid prediction');
+INSERT INTO `analysis_description` VALUES (91,'gorilla_cdna','Gorilla cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Gorilla RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (92,'gorilla_protein','Gorilla proteins from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB/TrEMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Gorilla prot.');
+INSERT INTO `analysis_description` VALUES (93,'gorilla_rnaseq','Illumina paired-end reads from Western lowland gorilla generated at the Wellcome Trust Sanger Institute (WTSI) aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','RNASeq gene');
+INSERT INTO `analysis_description` VALUES (94,'green_anole_cdna','Green anole cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Green anole cDNA');
+INSERT INTO `analysis_description` VALUES (95,'green_anole_est','Green anole \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Green anole EST');
+INSERT INTO `analysis_description` VALUES (96,'green_anole_protein','Green anole proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Green anole UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (97,'gsc','Ab initio prediction of protein coding genes by <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc\">Genscan</a>, with parameters customised for accuracy in Tetraodon sequences','GSC');
+INSERT INTO `analysis_description` VALUES (98,'gsten','Genes were annotated by <a rel=\"external\" href=\"http://www.genoscope.cns.fr/spip/\">Genoscope</a>, combining evidence from <a rel=\"external\" href=\"http://www1.imim.es/software/geneid/\">Geneid</a>, <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc\">Genscan</a>, <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a> and <a rel=\"external\" href=\"http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html\">Exofish</a> predictions with alignments of Tetraodon cDNAs to the genome. This was done automatically using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/full/12/9/1418\">GAZE</a> with a custom-designed configuration and gene structure model.','Genoscope gene');
+INSERT INTO `analysis_description` VALUES (99,'guineapig_cdna','Guineapig cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Guineapig cDNA');
+INSERT INTO `analysis_description` VALUES (100,'guineapig_est','Guineapig \'Expressed Sequence Tags\' (ESTs) from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> database are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Guineapig EST');
+INSERT INTO `analysis_description` VALUES (101,'guineapig_protein','Guineapig protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)','Guineapig protein');
+INSERT INTO `analysis_description` VALUES (102,'gws_uni','Alignment of a <a rel=\"external\" href=\"http://www.uniprot.org/\">Uniprot protein</a> to the genome by <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','UniProt prot.');
+INSERT INTO `analysis_description` VALUES (103,'havana','Manually annotated transcripts (determined on a case-by-case basis) from the <a rel=\"external\" href=\"http://www.sanger.ac.uk/HGP/havana/havana.shtml\">Havana</a> project.','Havana gene');
+INSERT INTO `analysis_description` VALUES (104,'havana_ig_gene','Immunoglobulin (Ig) and T-cell receptor (TcR) genes imported from the manually annotated IG gene set from the <a rel=\"external\" href=\"http://www.sanger.ac.uk/HGP/havana/havana.shtml\">Havana</a> project.','Ig/T-cell receptor gene');
+INSERT INTO `analysis_description` VALUES (105,'hmmpanther','HMM-Panther families','hmmpanther');
+INSERT INTO `analysis_description` VALUES (106,'horse_cdna','Horse cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Horse cDNA');
+INSERT INTO `analysis_description` VALUES (107,'horse_est','Horse \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Horse EST');
+INSERT INTO `analysis_description` VALUES (108,'horse_protein','Horse protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Horse prot.');
+INSERT INTO `analysis_description` VALUES (109,'hox','HOX genes manually curated by <a rel=\"external\" href=\"http://www.genoscope.cns.fr/spip/\">Genoscope</a>.','HOX gene');
+INSERT INTO `analysis_description` VALUES (110,'human_cdna','Human cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Human RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (111,'human_cdna2genome','Homo Sapiens cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate cnda2geome model</a>.','Human RefSeq/EMBL cdna2genome');
+INSERT INTO `analysis_description` VALUES (112,'human_ensembl_proteins','Selected Ensembl-predicted human peptide sequences aligned to the genome using the whole genome alignment to gene (WGA2Gene) projection method or <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Human Ensembl prot.');
+INSERT INTO `analysis_description` VALUES (113,'human_est','Homo sapiens \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Human EST');
+INSERT INTO `analysis_description` VALUES (114,'human_one2one_mus_orth','Human ensembl transcripts that are <a href=\"http://www.ensembl.org/info/docs/compara/homology_method.html\" class=\"cp-external\">one-to-one orthologues</a> with mouse are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Human protein');
+INSERT INTO `analysis_description` VALUES (115,'human_protein','Human proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> used in the <a href=\"http://www.ensembl.org/info/docs/genebuild/index.html\" class=\"cp-external\">genebuild</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Human UniProt prot.');
+INSERT INTO `analysis_description` VALUES (116,'human_refseq','Human proteins from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> used in the <a href=\"http://www.ensembl.org/info/docs/genebuild/index.html\" class=\"cp-external\">genebuild</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Human RefSeq prot.');
+INSERT INTO `analysis_description` VALUES (117,'ikmc_es_cells_available','IKMC_ES_cells_available','IKMC ES cells available');
+INSERT INTO `analysis_description` VALUES (118,'ikmc_mice_available','IKMC_Mice_available','IKMC Mice available');
+INSERT INTO `analysis_description` VALUES (119,'ikmc_no_products_available_yet','IKMC_No_products_available_yet','IKMC No products available yet');
+INSERT INTO `analysis_description` VALUES (120,'ikmc_vector_available','IKMC_Vector_available','IKMC Vector available');
+INSERT INTO `analysis_description` VALUES (121,'insertion_site','Feature imported from<a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a> gff files.','Insertion site');
+INSERT INTO `analysis_description` VALUES (122,'ipi_humanp','Human IPR proteins aligned by WU-BlastX','ipihumanP');
+INSERT INTO `analysis_description` VALUES (123,'ipi_humanx','Human IPR proteins aligned by WU-BlastX','ipihumanX');
+INSERT INTO `analysis_description` VALUES (124,'jappepp','Caenorhabditis japonica proteins aligned by WU-BlastP','JappepP');
+INSERT INTO `analysis_description` VALUES (125,'jappepx','Caenorhabditis japonica proteins aligned by WU-BlastX','JappepX');
+INSERT INTO `analysis_description` VALUES (126,'jgi_v1','Alignments to Ciona intestinalis gene models predicted by <a rel=\"external\" href=\"http://www.jgi.doe.gov/genome-projects/\">JGI</a> on <a rel=\"external\" href=\"http://www.sciencemag.org/cgi/content/full/298/5601/2157\">assembly version 1.0</a>.','JGI v1 prediction');
+INSERT INTO `analysis_description` VALUES (127,'jgi_v2','Alignments to Ciona intestinalis gene models predicted by JGI on assembly version 2.0 ( http://genome.jgi-psf.org/Cioin2/Cioin2.home.html )','JGI v2 prediction');
+INSERT INTO `analysis_description` VALUES (128,'knowngenedensity','Known gene density as calculated by <a rel=\"external\" href=\"http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl/misc-scripts/density_feature/gene_density_calc.pl?root=ensembl&view=markup\">gene_density_calc.pl</a>.','Genes (density)');
+INSERT INTO `analysis_description` VALUES (129,'kyotograil_2004','C. intestinalis gene models from the <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">KYOTOGRAIL set, version 2004,</a> aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Kyotograil 04 prediction');
+INSERT INTO `analysis_description` VALUES (130,'kyotograil_2005','C. intestinalis gene models from the <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">KYOTOGRAIL set, version 2005,</a> aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Kyotograil 05 prediction');
+INSERT INTO `analysis_description` VALUES (131,'lrg_import','Data from LRG database','LRG Genes');
+INSERT INTO `analysis_description` VALUES (132,'macaque_cdna','Macaque cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Macaque cDNA');
+INSERT INTO `analysis_description` VALUES (133,'macaque_est','Macaque \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Macaque EST');
+INSERT INTO `analysis_description` VALUES (134,'macaque_protein','Macaque proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Macaque UniProt prot.');
+INSERT INTO `analysis_description` VALUES (135,'macaque_refseq','Macaque proteins from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> used in the <a href=\"http://www.ensembl.org/info/docs/genebuild/index.html\" class=\"cp-external\">genebuild</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Macaque RefSeq prot.');
+INSERT INTO `analysis_description` VALUES (136,'mammal_protein','Mammalian proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Mammal UniProt prot.');
+INSERT INTO `analysis_description` VALUES (137,'marker','Markers, or sequence tagged sites (STS), from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/sites/entrez?db=unists\">UniSTS</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/full/7/5/541\">Electronic PCR (e-PCR)</a>.','Marker');
+INSERT INTO `analysis_description` VALUES (138,'marmoset_cdna','Callithrix jacchus cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Marmoset cDNA');
+INSERT INTO `analysis_description` VALUES (139,'marmoset_est','Callithrix jacchus \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Marmoset EST');
+INSERT INTO `analysis_description` VALUES (140,'marmoset_protein','Callithrix jacchus protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Marmoset UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (141,'mature_peptide','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Mature Peptide');
+INSERT INTO `analysis_description` VALUES (142,'medaka_5psage','Medaka 5pSAGE data provided by the University of Tokyo and aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)','Medaka 5\' SAGE');
+INSERT INTO `analysis_description` VALUES (143,'medaka_cdna','Medaka cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Medaka RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (144,'medaka_est','Medaka \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Medaka EST');
+INSERT INTO `analysis_description` VALUES (145,'medaka_genome_project','Genes predicted by the Medaka Genome Project, viz. the University of Tokyo (http://medaka.utgenome.org/) and the National Institute of Genetics (http:// dolphin.lab.nig.ac.jp/medaka/).','MGP gene');
+INSERT INTO `analysis_description` VALUES (146,'medaka_protein','Medaka proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Medaka UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (147,'medaka_transcriptcoalescer','Medaka genes, predicted using Medaka ESTs as input for the gene-predicting module TranscriptCoalescer.','EST-based gene');
+INSERT INTO `analysis_description` VALUES (148,'mouse_cdna','Murine cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.ebi.ac.uk/~guy/exonerate/\">Exonerate</a>.','Mouse RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (149,'mouse_est','Murine \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Mouse EST');
+INSERT INTO `analysis_description` VALUES (150,'mouse_protein','Murine proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Mouse UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (151,'mt_genbank_import','Mitochondrial gene models imported from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/Genbank/\">Genbank</a>. Genbank is part of the International Nucleotide Sequence Database Collaboration, which also includes the DNA DataBank of Japan (DDBJ) and the European Molecular Biology Laboratory (EMBL).','Imported MT gene models');
+INSERT INTO `analysis_description` VALUES (152,'mus_one2one_human_orth','Mouse ensembl transcripts that are <a href=\"http://www.ensembl.org/info/docs/compara/homology_method.html\" class=\"cp-external\">one-to-one orthologues</a> with human are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Mouse protein');
+INSERT INTO `analysis_description` VALUES (153,'ncoils','Prediction of coiled-coil regions in proteins is by <a rel=\"external\" href=\"http://www.sciencemag.org/cgi/reprint/252/5009/1162\">Ncoils</a>.','Coiled-coils (Ncoils)');
+INSERT INTO `analysis_description` VALUES (154,'ncrna','Non-coding RNA (ncRNA) is predicted using sequences from <a href=\"http://rfam.sanger.ac.uk\">RFAM</a> and <a href=\"http://microrna.sanger.ac.uk/sequences/index.shtml\">miRBase</a>. See <a href=\"http://www.ensembl.org/info/docs/genebuild/ncrna.html\" class=\"cp-external\">article</a>.','ncRNA gene');
+INSERT INTO `analysis_description` VALUES (155,'ncrna_pseudogene','ncRNA pseudogenes imported from the manual annotation produced by Sean Eddy group.','ncRNA pseudogene');
+INSERT INTO `analysis_description` VALUES (156,'nembase_contig','NemBase EST contigs','nembasecontig');
+INSERT INTO `analysis_description` VALUES (157,'operon','Multi-gene feature imported from <a rel=\"external\" href=\"http://www.wormbase.org\">Wormbase</a> annotation.','Operon');
+INSERT INTO `analysis_description` VALUES (158,'opossum_cdna','Opossum cDNAs are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Opossum cDNA');
+INSERT INTO `analysis_description` VALUES (159,'opossum_protein','Opossum proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Opossum UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (160,'orangutan_cdna','Orangutan cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)','Orangutan cDNA');
+INSERT INTO `analysis_description` VALUES (161,'orangutan_est','Orangutan ESTs from EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)','Orangutan EST');
+INSERT INTO `analysis_description` VALUES (162,'orangutan_protein','Orangutan proteins from Swiss-Prot/TrEMBL aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)','Orangutan prot.');
+INSERT INTO `analysis_description` VALUES (163,'ost','Caenorhabditis elegans OSTs of the Vidal Lab aligned to the genome using BLAT','C.elegans OST');
+INSERT INTO `analysis_description` VALUES (164,'other_est','For various species, \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Various EST');
+INSERT INTO `analysis_description` VALUES (165,'other_protein','For various species, proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome with <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Other sp. prot.');
+INSERT INTO `analysis_description` VALUES (166,'otter','Finished genomic sequence is analysed on a clone by clone basis using a combination of similarity searches against DNA and protein databases as well as a series of ab initio gene predictions (GENSCAN, Augustus). In addition, comparative analysis using vertebrate datasets is used to aid novel gene discovery. The data gathered in these steps is then used to manually annotate the clone adding gene structures, descriptions and poly-A features. The annotation is based on supporting evidence only.','Vega Havana gene');
+INSERT INTO `analysis_description` VALUES (167,'otter_external','See <a href=\"http://vega.sanger.ac.uk/info/about/man_annotation.html\">the Vega website</a> for details of the approaches used for the annotation of external Vega genes','Vega External gene');
+INSERT INTO `analysis_description` VALUES (168,'oxford_fgu','Gene predictions generated by <a rel=\"external\" href=\"http://www.mrcfgu.ox.ac.uk/research/chris-p-ponting/\">Chris Ponting\'s group</a> at the <a rel=\"external\" href=\"http://www.mrcfgu.ox.ac.uk/\">MRC-FGU, Oxford</a>.','FGU gene');
+INSERT INTO `analysis_description` VALUES (169,'percentagerepeat','Percentage of repetitive elements for top level sequences (such as chromosomes, scaffolds, etc.)','Repeats (percent)');
+INSERT INTO `analysis_description` VALUES (170,'percentgc','Percentage of G/C bases in the sequence.','GC content');
+INSERT INTO `analysis_description` VALUES (171,'pfam','Protein domains and motifs in the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D138?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Bateman&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT\">Pfam</a> database.','Pfam domain');
+INSERT INTO `analysis_description` VALUES (172,'pfscan','Protein domains and motifs from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/ppsearch/\">PROSITE</a> profiles database are aligned to the genome.','PROSITE profiles');
+INSERT INTO `analysis_description` VALUES (173,'pig_cdna','Pig cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','pig cDNA');
+INSERT INTO `analysis_description` VALUES (174,'pig_est','Pig \'Expressed Sequence Tags\' (ESTs) from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> database are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','pig EST');
+INSERT INTO `analysis_description` VALUES (175,'pig_protein','Pig protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)','pig protein');
+INSERT INTO `analysis_description` VALUES (176,'pirsf','Protein domains and motifs from the <a rel=\"external\" href=\"http://pir.georgetown.edu/pirwww/index.shtml\">PIR (Protein Information Resource)</a> Superfamily database.','PIRSF domain');
+INSERT INTO `analysis_description` VALUES (177,'platypus_454_cdna','Platypus reads from 454 sequencing are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Sequence reads (454)');
+INSERT INTO `analysis_description` VALUES (178,'platypus_cdna','Platypus cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Platypus cDNA');
+INSERT INTO `analysis_description` VALUES (179,'platypus_est','Platypus \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Platypus EST');
+INSERT INTO `analysis_description` VALUES (180,'platypus_olfactory_receptors','Manually curated olfactory receptor sequences from <a rel=\"external\" href=\"http://www.funpecrp.com.br/gmr2008b/issue.asp?volume=541&capitulo=551#anc_206\">Tsviya Olender</a>','P.O.R. gene');
+INSERT INTO `analysis_description` VALUES (181,'platypus_olfactory_receptor_cdna','Manually curated olfactory receptor sequences from <a rel=\"external\" href=\"http://www.funpecrp.com.br/gmr2008b/issue.asp?volume=541&capitulo=551#anc_206\">Tsviya Olender</a>','P.O.R. gene');
+INSERT INTO `analysis_description` VALUES (182,'platypus_protein','Platypus proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Platypus prot.');
+INSERT INTO `analysis_description` VALUES (183,'polya_site','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','PolyA Site');
+INSERT INTO `analysis_description` VALUES (184,'ppapepp','Pristionchus pacificus proteins aligned by WU-BlastP','PpapepP');
+INSERT INTO `analysis_description` VALUES (185,'ppapepx','Pristionchus pacificus proteins aligned by WU-BlastX','PpapepX');
+INSERT INTO `analysis_description` VALUES (186,'prints','Protein fingerprints (groups of conserved motifs) are aligned to the genome. These motifs come from the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/abstract/31/1/400?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Attwood&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT\">PRINTS</a> database.','Prints domain');
+INSERT INTO `analysis_description` VALUES (187,'protein_binding_site','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Protein Binding Site');
+INSERT INTO `analysis_description` VALUES (188,'pseudogene','Pseudogenes are identified from the Ensembl <a href=\"http://www.ensembl.org/info/docs/genebuild/genome_annotation.html\" class=\"cp-external\">gene set</a> (predicted by <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>/Exonerate) on the basis of frameshifted introns (introns of less than 10bp) and intron repeat content (introns of more than 80% repeat). See <a href=\"http://www.ensembl.org/info/docs/genebuild/genome_annotation.html#Other\" class=\"cp-external\">article</a> for more.','Pseudogene');
+INSERT INTO `analysis_description` VALUES (189,'qtl','Quantitative Trait Loci (QTL) features.','QTL');
+INSERT INTO `analysis_description` VALUES (190,'rabbit_cdna','Rabbit cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Rabbit cDNA');
+INSERT INTO `analysis_description` VALUES (191,'rabbit_est','Oryctolagus cuniculus \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Rabbit EST');
+INSERT INTO `analysis_description` VALUES (192,'rabbit_protein','Rabbit proteins from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB/TrEMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Rabbit prot.');
+INSERT INTO `analysis_description` VALUES (193,'rat_cdna','Rattus norvegicus cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Rat RefSeq/EMBL cDNA');
+INSERT INTO `analysis_description` VALUES (194,'rat_cdna2genome','Rattus norvegicus cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate cnda2geome model</a>.','Rat RefSeq/EMBL cdna2genome');
+INSERT INTO `analysis_description` VALUES (195,'rat_est','Rattus norvegicus \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Rat EST');
+INSERT INTO `analysis_description` VALUES (196,'refseq_human','Human cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Human RefSeq cDNA');
+INSERT INTO `analysis_description` VALUES (197,'refseq_human_import','Human RefSeq gene models from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> were imported into Ensembl in June 2009.','Human RefSeq import');
+INSERT INTO `analysis_description` VALUES (198,'regulatory_region','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Regulatory Region');
+INSERT INTO `analysis_description` VALUES (199,'remaneip','C. remanei proteins aligned by WU-BlastP','remaneiP');
+INSERT INTO `analysis_description` VALUES (200,'remaneix','C. remanei proteins aligned by WU-BlastX','remaneiX');
+INSERT INTO `analysis_description` VALUES (201,'repeatmask','<a rel=\"external\" href=\"http://www.repeatmasker.org\">RepeatMasker</a> is used to find repeats and low-complexity sequences. This track usually shows repeats alone (not low-complexity sequences).','Repeats');
+INSERT INTO `analysis_description` VALUES (202,'rescue_fragment','Feature (Fly) imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Rescue Fragment');
+INSERT INTO `analysis_description` VALUES (203,'rfamblast','<a href=\"http://www.ensembl.org/info/docs/genebuild/ncrna.html\" class=\"cp-external\">Positions</a>Positions of ncRNAs (non-coding RNAs) from the <a rel=\"external\" href=\"http://rfam.sanger.ac.uk/\">Rfam </a> database are shown. Initial BLASTN hits of genomic sequence to RFAM ncRNAs are clustered and filtered by E value. These hits are supporting evidence for ncRNA genes.','RFAM ncRNA gene');
+INSERT INTO `analysis_description` VALUES (204,'rna-seq_exon_supporting_feat','Supporting feature for exons of RNA-Seq gene model','RNA-Seq exon supp feat');
+INSERT INTO `analysis_description` VALUES (205,'rnai','Aligned probes from RNA interference experiments.','RNAi');
+INSERT INTO `analysis_description` VALUES (206,'rodent_protein','Rodent Proteins from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB/TrEMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Rodent RefSeq/TrEMBL prot.');
+INSERT INTO `analysis_description` VALUES (207,'rrna','ribosomal RNA genes','rRNA');
+INSERT INTO `analysis_description` VALUES (208,'savignyi_est','Ciona savignyi \'Expressed Sequence Tags\' (ESTs) were aligned to corrected cDNA sequences from the <a rel=\"external\" href=\"http://ghost.zool.kyoto-u.ac.jp/indexr1.html\">Kyoto-EST-set</a> using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','C.savignyi EST');
+INSERT INTO `analysis_description` VALUES (209,'scanprosite','Protein domains and motifs from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/ppsearch/\">PROSITE</a> profiles database are aligned to the genome.','PROSITE patterns');
+INSERT INTO `analysis_description` VALUES (210,'seg','Identification of peptide low complexity sequences by <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFV-44PXMF3-45&_user=776054&_coverDate=06%2F30%2F1993&_rdoc=6&_fmt=high&_orig=browse&_srch=doc-info(%23toc%235236%231993%23999829997%23279143%23FLP%23display%23Volume)&_cdi=5236&_sort=d&_docanchor=&_ct=13&_acct=C000042238&_version=1&_urlVersion=0&_userid=776054&md5=ac6f98882f2c6626643118367fb28cad\">Seg</a>.','Low complexity (Seg)');
+INSERT INTO `analysis_description` VALUES (211,'seleno_genebuilder','Seleno protein cDNAs aligned using <a rel=\"external\" href=\"http://www.ebi.ac.uk/~guy/exonerate/\">Exonerate</a> with selenocysteines added based on EMBL annotation.','EMBL seleno protein cDNA');
+INSERT INTO `analysis_description` VALUES (212,'sequence_variant','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Sequence Variant');
+INSERT INTO `analysis_description` VALUES (213,'sgd','Gene imported from <a href=\"http://www.yeastgenome.org/\">SGD</a>','SGD gene');
+INSERT INTO `analysis_description` VALUES (214,'sheep_bac_ends','Sheep Bacterial Artificial Chromosome (end sequences) are aligned to the genome sequence using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Sheep BAC ends');
+INSERT INTO `analysis_description` VALUES (215,'signalp','Prediction of signal peptide cleavage sites by <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4CKBS0M-3&_user=776054&_coverDate=07%2F16%2F2004&_alid=772330061&_rdoc=1&_fmt=high&_orig=search&_cdi=6899&_sort=d&_docanchor=&view=c&_ct=1&_acct=C000042238&_version=1&_urlVersion=0&_userid=776054&md5=9f42be939814b7711268fd414604c9dd\">SignalP</a>.','Cleavage site (Signalp)');
+INSERT INTO `analysis_description` VALUES (216,'singapore_est','Expressed Sequence Tag (EST)-based gene prediction provided by B. Kumarasamy and E. Stupka.','Singapore EST-based gene');
+INSERT INTO `analysis_description` VALUES (217,'singapore_protein','Protein-based gene-prediction','Singapore gene');
+INSERT INTO `analysis_description` VALUES (218,'slimswissprotp','Swissprot proteins aligned by WU-BlastP','slimswissprotP');
+INSERT INTO `analysis_description` VALUES (219,'slimswissprotx','Swissprot proteins aligned by WU-BlastX','slimswissprotX');
+INSERT INTO `analysis_description` VALUES (220,'slimtremblp','TrEMBL proteins aligned by WU-BlastP','slimtremblP');
+INSERT INTO `analysis_description` VALUES (221,'slimtremblx','TrEMBL proteins aligned by WU-BlastX','slimtremblX');
+INSERT INTO `analysis_description` VALUES (222,'smart','Protein domains and motifs in the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/34/suppl_1/D257?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=letunic&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=1/1/2006&tdate=12/31/2006&resourcetype=HWCIT\">SMART</a> database.','SMART domain');
+INSERT INTO `analysis_description` VALUES (223,'snap','Ab initio gene prediction by <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/5/59\">SNAP</a>, on genomic sequence alone.','SNAP prediction');
+INSERT INTO `analysis_description` VALUES (224,'snlrna','small nucleolar like RNA genes','snlRNA');
+INSERT INTO `analysis_description` VALUES (225,'snorna','small nucleolar RNA genes','snoRNA');
+INSERT INTO `analysis_description` VALUES (226,'snpdensity','Density of Single Nucleotide Polymorphisms (SNPs) calculated by variation_density.pl (see scripts at the <a rel=\"external\" href=\"http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/?root=ensembl\">Sanger Institute CVS</a> repository).','SNP Density');
+INSERT INTO `analysis_description` VALUES (227,'snrna','small nuclear RNA genes','snRNA');
+INSERT INTO `analysis_description` VALUES (228,'stickleback_cdna','Gasterosteus aculeatus cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.ebi.ac.uk/~guy/exonerate/\">Exonerate</a>.','Stickleback cDNA');
+INSERT INTO `analysis_description` VALUES (229,'stickleback_est','Gasterosteus aculeatus \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Stickleback EST');
+INSERT INTO `analysis_description` VALUES (230,'stickleback_protein','Gasterosteus aculeatus proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Stickleback prot.');
+INSERT INTO `analysis_description` VALUES (231,'superfamily','Protein domains and motifs in the <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-457CXWM-3D&_user=776054&_coverDate=11%2F02%2F2001&_rdoc=17&_fmt=high&_orig=browse&_srch=doc-info(%23toc%236899%232001%23996869995%23286382%23FLA%23display%23Volume)&_cdi=6899&_sort=d&_docanchor=&_ct=17&_acct=C000042238&_version=1&_urlVersion=0&_userid=776054&md5=a921e84cd71c59f75644aa28f3224b58\">SUPERFAMILY</a> database.','Superfamily domain');
+INSERT INTO `analysis_description` VALUES (232,'supp_repeatmask','Interspersed repeats and low complexity sequence identified by <a rel=\"external\" href=\"http://www.repeatmasker.org\">RepeatMasker</a> using a supplemental repeat database specific to the species.','Supp. Repeats (Recon)');
+INSERT INTO `analysis_description` VALUES (233,'tetraodon_cdna','Tetraodon cDNAs from <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/Genbank/\">Genbank</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Tetraodon cDNA');
+INSERT INTO `analysis_description` VALUES (234,'tetraodon_est','Tetraodon \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Tetraodon EST');
+INSERT INTO `analysis_description` VALUES (235,'tetraodon_protein','Tetraodon proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Tetraodon prot.');
+INSERT INTO `analysis_description` VALUES (236,'tigrfam','Protein domains and motifs in the <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/31/1/371?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Haft&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=1/1/2003&tdate=12/31/2003&resourcetype=HWCIT\">TIGRFAM</a> database.','TIGRFAM domain');
+INSERT INTO `analysis_description` VALUES (237,'tmhmm','Prediction of transmembrane helices in proteins by <a rel=\"external\" href=\"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-457D7V9-K&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=a113464457fa5206c6699b9d464cbfee\">TMHMM</a>.','Transmembrane helices');
+INSERT INTO `analysis_description` VALUES (238,'transposable_element','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','TE');
+INSERT INTO `analysis_description` VALUES (239,'trf','<a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/27/2/573?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Benson&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=1/1/1999&tdate=12/31/1999&resourcetype=HWCIT\">Tandem Repeats Finder</a> locates adjacent copies of a pattern of nucleotides.','Tandem repeats (TRF)');
+INSERT INTO `analysis_description` VALUES (240,'trna','transfer RNA genes','tRNA');
+INSERT INTO `analysis_description` VALUES (241,'trnascan','Prediction of tRNAs in genomic sequence is through <a rel=\"external\" href=\"http://nar.oxfordjournals.org/cgi/content/full/25/5/955 \">tRNAscan-SE</a>. See <a href=\"http://www.ensembl.org/info/docs/genebuild/ncrna.html\" class=\"cp=external\">article.</a>','tRNA');
+INSERT INTO `analysis_description` VALUES (242,'uncharacterized_change_in_nucleotide_seq','Feature imported from <a rel=\"external\" href=\"http://www.flybase.org\">FlyBase</a>.','Nuc. seq. change');
+INSERT INTO `analysis_description` VALUES (243,'unigene','Positions of <a rel=\"external\" href=\"http://ncbi.nlm.nih.gov/UniGene/\">UniGene</a> sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences.','Unigene EST cluster');
+INSERT INTO `analysis_description` VALUES (244,'uniprot','Proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted peptides to UniProtKB proteins.','UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (245,'uniprot_mammal','Mammalian proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted mammalian peptides to UniProtKB proteins.','mammal UniProt prot.');
+INSERT INTO `analysis_description` VALUES (246,'uniprot_non_mammal','Non-mammal proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins.','non-mammal UniProt prot.');
+INSERT INTO `analysis_description` VALUES (247,'uniprot_non_vertebrate','Non-vertebrate proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins.','non-vertebrate UniProt prot.');
+INSERT INTO `analysis_description` VALUES (248,'uniprot_sw','Proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB Swiss-Prot</a> database, aligned to the genome.','UniProt prot.');
+INSERT INTO `analysis_description` VALUES (249,'uniprot_tr','Proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB TrEMBL</a> database, aligned to the genome.','TrEMBL prot.');
+INSERT INTO `analysis_description` VALUES (250,'uniprot_vertebrate_non_mammal','Non-mammal proteins from the <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins.','non-mammal vertebrate UniProt prot.');
+INSERT INTO `analysis_description` VALUES (251,'vertrna','Positions of vertebrate mRNAs along the genome. mRNAs are from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">European Nucleotide Archive (was EMBL)</a> database. Initial alignments are performed using TBLASTN of Genscan-predicted peptides against the European Nucleotide Archive (was EMBL) mRNAs.','ENA vertebrate cDNA');
+INSERT INTO `analysis_description` VALUES (252,'vertrna_other','Positions of vertebrate non-coding mRNAs along the genome. mRNAs are from the <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> database.','EMBL vertebrate non-coding cDNA');
+INSERT INTO `analysis_description` VALUES (253,'washu_contig','Washington University Nematode clusters aligned by BLAT','Washu. contig');
+INSERT INTO `analysis_description` VALUES (254,'wga2genes','Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome','BLASTZ prot.');
+INSERT INTO `analysis_description` VALUES (255,'wormbase','This gene was annotated and aligned to the genome by <a rel=\"external\" href=\"http://www.wormbase.org\">Wormbase</a> through a process of automatic and manual curation.','Worm gene');
+INSERT INTO `analysis_description` VALUES (256,'wormpepp','C. elegans proteins aligned by WU-BlastP','wormpepP');
+INSERT INTO `analysis_description` VALUES (257,'wormpepx','C. elegans proteins aligned by WU-BlastX','wormpepX');
+INSERT INTO `analysis_description` VALUES (258,'xlaevis_cdna','Xenopus laevis cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','X.laevis cDNA');
+INSERT INTO `analysis_description` VALUES (259,'xlaevis_est','Xenopus laevis \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','X.laevis EST');
+INSERT INTO `analysis_description` VALUES (260,'xrefcoordinatemapping','xrefcoordinatemapping','xrefcoordinatemapping');
+INSERT INTO `analysis_description` VALUES (261,'xrefexoneratedna','Sequences from various databases are matched to Ensembl transcripts using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>. These are external references, or \'Xrefs\'.','DNA match');
+INSERT INTO `analysis_description` VALUES (262,'xrefexonerateprotein','match','Protein');
+INSERT INTO `analysis_description` VALUES (263,'xtrop_cdna','Xenopus tropicalis cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','X.tropicalis cDNA');
+INSERT INTO `analysis_description` VALUES (264,'xtrop_cluster','Xenopus laevis \'Expressed Sequence Tag Clusters\' (ESTs) from <a rel=\"external\" href=\"http://informatics.gurdon.cam.ac.uk/cgi-bin/public.exe\">Gurdon Institute Xenopus tropicalis Full-Length Database</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','X.laevis EST cluster');
+INSERT INTO `analysis_description` VALUES (265,'xtrop_est','Xenopus tropicalis \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','X.tropicalis EST');
+INSERT INTO `analysis_description` VALUES (266,'xtrop_protein','Xenopus tropicalis proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','X.tropicalis prot.');
+INSERT INTO `analysis_description` VALUES (267,'yeastp','S. cerevisiae proteins aligned by WU-BlastP','yeastP');
+INSERT INTO `analysis_description` VALUES (268,'yeastx','S. cerevisiae proteins aligned by WU-BlastX','yeastX');
+INSERT INTO `analysis_description` VALUES (269,'zebra_finch_cdna','Taeniopygia guttata cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Zebra finch cDNA');
+INSERT INTO `analysis_description` VALUES (270,'zebra_finch_est','Taeniopygia guttata \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Zebra finch EST');
+INSERT INTO `analysis_description` VALUES (271,'zebra_finch_protein','Taeniopygia guttata protein sequences from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> and <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Zebra finch UniProtKB prot.');
+INSERT INTO `analysis_description` VALUES (272,'zfish_14dpf_intron','Spliced RNASeq read support for intron from 14 days post fertilization embryos','14dpf intron');
+INSERT INTO `analysis_description` VALUES (273,'zfish_1dpf_intron','Spliced RNASeq read support for intron from 1 day post fertilization embryos','1dpf intron');
+INSERT INTO `analysis_description` VALUES (274,'zfish_2cells_intron','Spliced RNASeq read support for intron from 2 cell stage','2 cell intron');
+INSERT INTO `analysis_description` VALUES (275,'zfish_2dpf_intron','Spliced RNASeq read support for intron from 2 days post fertilization embryos','2dpf intron');
+INSERT INTO `analysis_description` VALUES (276,'zfish_3dpf_intron','Spliced RNASeq read support for intron from 3 days post fertilization embryos','3dpf intron');
+INSERT INTO `analysis_description` VALUES (277,'zfish_5dpf_intron','Spliced RNASeq read support for intron from 5 days post fertilization embryos','5dpf intron');
+INSERT INTO `analysis_description` VALUES (278,'zfish_6hpf_intron','Spliced RNASeq read support for intron from 6 hours post fertilization embryos','6hpf intron');
+INSERT INTO `analysis_description` VALUES (279,'zfish_cdna','Danio rerio cDNAs from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/RefSeq/\">NCBI RefSeq</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/embl/\">EMBL</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Zebrafish cDNA');
+INSERT INTO `analysis_description` VALUES (280,'zfish_est','Danio rerio \'Expressed Sequence Tags\' (ESTs) from <a rel=\"external\" href=\"http://www.ncbi.nlm.nih.gov/dbEST/\">dbEST</a> are aligned to the genome using <a rel=\"external\" href=\"http://www.biomedcentral.com/1471-2105/6/31\">Exonerate</a>.','Zebrafish EST');
+INSERT INTO `analysis_description` VALUES (281,'zfish_female_body_intron','Spliced RNASeq read support for intron from female body','Female body intron');
+INSERT INTO `analysis_description` VALUES (282,'zfish_female_head_intron','Spliced RNASeq read support for intron from female head','Female head intron');
+INSERT INTO `analysis_description` VALUES (283,'zfish_male_body_intron','Spliced RNASeq read support for intron from male body\n','Male body intron');
+INSERT INTO `analysis_description` VALUES (284,'zfish_male_head_intron','Spliced RNASeq read support for intron from male head','Male head intron');
+INSERT INTO `analysis_description` VALUES (285,'zfish_ovary_intron','Spliced RNASeq read support for intron from ovary','Ovary intron');
+INSERT INTO `analysis_description` VALUES (286,'zfish_protein','Zebrafish proteins from <a rel=\"external\" href=\"http://uniprot.org\">UniProtKB</a> are aligned to the genome using <a rel=\"external\" href=\"http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT\">GeneWise</a>.','Zebrafish prot.');
+INSERT INTO `analysis_description` VALUES (287,'zfish_rnaseq','Gene models built using only <a href=\"http://www.ensembl.org/info/docs/genebuild/zebrafish_rnaseq_annotation.html\" class=\"cp-external\">Zebrafish RNASeq</a> data.','RNASeq gene');
+
+--
+-- Table structure for table `analysis_web_data`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `analysis_web_data` (
+ `analysis_description_id` int(10) unsigned NOT NULL,
+ `web_data_id` int(10) unsigned NOT NULL,
+ `db_id` int(10) unsigned NOT NULL,
+ UNIQUE KEY `analysis_web_data_db_idx` (`analysis_description_id`,`web_data_id`,`db_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `analysis_web_data`
+--
+-- ORDER BY: `analysis_description_id`,`web_data_id`,`db_id`
+
+
+--
+-- Table structure for table `biotype`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `biotype` (
+ `biotype_id` int(10) unsigned NOT NULL,
+ `name` varchar(64) NOT NULL,
+ `is_current` tinyint(1) NOT NULL DEFAULT '1',
+ `is_dumped` tinyint(1) NOT NULL DEFAULT '1',
+ `object_type` enum('gene','transcript') NOT NULL DEFAULT 'gene',
+ `db_type` set('cdna','core','coreexpressionatlas','coreexpressionest','coreexpressiongnf','funcgen','otherfeatures','variation','vega') NOT NULL DEFAULT 'core',
+ `description` text,
+ PRIMARY KEY (`biotype_id`),
+ UNIQUE KEY `name_type_idx` (`name`,`object_type`,`db_type`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `biotype`
+--
+-- ORDER BY: `biotype_id`
+
+INSERT INTO `biotype` VALUES (1,'IG_C_gene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (2,'IG_C_gene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (3,'IG_D_gene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (4,'IG_D_gene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (5,'IG_J_gene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (6,'IG_J_gene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (7,'IG_J_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (8,'IG_J_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (9,'IG_V_gene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (10,'IG_V_gene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (11,'IG_V_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (12,'IG_V_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (13,'IG_gene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (14,'IG_gene',1,1,'transcript','vega',NULL);
+INSERT INTO `biotype` VALUES (15,'IG_pseudogene',1,1,'gene','core,vega',NULL);
+INSERT INTO `biotype` VALUES (16,'IG_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (17,'LRG_gene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (18,'LRG_gene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (19,'Mt_rRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (20,'Mt_rRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (21,'Mt_tRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (22,'Mt_tRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (23,'Mt_tRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (24,'Mt_tRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (25,'RNA-Seq_gene',1,1,'gene','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (26,'RNA-Seq_gene',1,1,'transcript','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (27,'TEC',1,1,'gene','core,vega',NULL);
+INSERT INTO `biotype` VALUES (28,'TEC',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (29,'TR_gene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (30,'TR_gene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (31,'TR_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (32,'TR_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (33,'ambiguous_orf',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (34,'antisense',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (35,'cDNA_update',1,1,'gene','cdna',NULL);
+INSERT INTO `biotype` VALUES (36,'cDNA_update',1,1,'transcript','cdna',NULL);
+INSERT INTO `biotype` VALUES (37,'cdna',1,1,'gene','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (38,'cdna',1,1,'transcript','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (39,'disrupted_domain',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (40,'est',1,1,'gene','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (41,'est',1,1,'transcript','otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (42,'lincRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (43,'lincRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (44,'miRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (45,'miRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (46,'miRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (47,'miRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (48,'misc_RNA',1,1,'gene','core,otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (49,'misc_RNA',1,1,'transcript','core,otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (50,'misc_RNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (51,'misc_RNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (52,'ncRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (53,'ncRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (54,'non_coding',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (55,'non_coding',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (56,'nonsense_mediated_decay',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (57,'polymorphic',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (58,'polymorphic_pseudogene',1,1,'gene','core,vega',NULL);
+INSERT INTO `biotype` VALUES (59,'polymorphic_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (60,'processed_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (61,'processed_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (62,'processed_transcript',1,1,'gene','core,vega',NULL);
+INSERT INTO `biotype` VALUES (63,'processed_transcript',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (64,'protein_coding',1,1,'gene','core,otherfeatures,vega',NULL);
+INSERT INTO `biotype` VALUES (65,'protein_coding',1,1,'transcript','core,otherfeatures,vega',NULL);
+INSERT INTO `biotype` VALUES (66,'pseudogene',1,1,'gene','core,otherfeatures,vega',NULL);
+INSERT INTO `biotype` VALUES (67,'pseudogene',1,1,'transcript','core,otherfeatures,vega',NULL);
+INSERT INTO `biotype` VALUES (68,'rRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (69,'rRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (70,'rRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (71,'rRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (72,'retained_intron',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (73,'retrotransposed',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (74,'retrotransposed',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (75,'scRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (76,'scRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (77,'snRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (78,'snRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (79,'snRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (80,'snRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (81,'snlRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (82,'snlRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (83,'snoRNA',1,1,'gene','core,otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (84,'snoRNA',1,1,'transcript','core,otherfeatures',NULL);
+INSERT INTO `biotype` VALUES (85,'snoRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (86,'snoRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (87,'tRNA',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (88,'tRNA',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (89,'tRNA_pseudogene',1,1,'gene','core',NULL);
+INSERT INTO `biotype` VALUES (90,'tRNA_pseudogene',1,1,'transcript','core',NULL);
+INSERT INTO `biotype` VALUES (91,'transcribed_processed_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (92,'transcribed_processed_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (93,'transcribed_unitary_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (94,'transcribed_unprocessed_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (95,'transcribed_unprocessed_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (96,'unitary_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (97,'unitary_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (98,'unprocessed_pseudogene',1,1,'gene','vega',NULL);
+INSERT INTO `biotype` VALUES (99,'unprocessed_pseudogene',1,1,'transcript','core,vega',NULL);
+INSERT INTO `biotype` VALUES (100,'ccds_gene',1,0,'gene','otherfeatures','Imported CCDS gene models');
+
+--
+-- Table structure for table `changelog`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `changelog` (
+ `changelog_id` int(10) unsigned NOT NULL,
+ `release_id` int(11) DEFAULT NULL,
+ `title` varchar(128) DEFAULT NULL,
+ `content` text,
+ `notes` text,
+ `status` enum('declared','handed_over','postponed','cancelled') DEFAULT NULL,
+ `team` enum('Compara','Core','Funcgen','Genebuild','Mart','Outreach','Variation','Web','EnsemblGenomes','Wormbase') DEFAULT NULL,
+ `assembly` enum('N','Y') DEFAULT NULL,
+ `gene_set` enum('N','Y') DEFAULT NULL,
+ `repeat_masking` enum('N','Y') DEFAULT NULL,
+ `stable_id_mapping` enum('N','Y') DEFAULT NULL,
+ `affy_mapping` enum('N','Y') DEFAULT NULL,
+ `biomart_affected` enum('N','Y') DEFAULT NULL,
+ `db_status` enum('N/A','unchanged','patched','new') DEFAULT NULL,
+ `created_by` int(11) DEFAULT NULL,
+ `created_at` datetime DEFAULT NULL,
+ `modified_by` int(11) DEFAULT NULL,
+ `modified_at` datetime DEFAULT NULL,
+ PRIMARY KEY (`changelog_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `changelog`
+--
+-- ORDER BY: `changelog_id`
+
+INSERT INTO `changelog` VALUES (1,59,'Changelog','<p>As of release 59, Ensembl will use a changelog to track detailed updates to the data and code. This will be separate from the release news, which will focus on major updates such as new species and web features.</p>\r\n\r\n<p>The changelog is stored in the new ensembl_production database, rather than ensembl_website.</p>','sauausatuhusahsu','handed_over','Web','N','N','N','N','N',NULL,'N/A',2,'2010-05-18 11:04:18',2,'2010-07-16 09:36:02');
+INSERT INTO `changelog` VALUES (3,59,'Ensembl marts for release 59','<p>Full build of seven marts:<br />- sequence mart.<br />- ensembl mart: possible orthologs added.<br />- snp mart: somatic data set added.<br />- ontology mart.<br />- vega mart<br />- functional genomics mart.<br />- genomic features mart.</p>','','handed_over','Mart','N','N','N','N','N',NULL,'N/A',100169,'2010-05-27 16:32:04',36,'2010-07-27 14:38:25');
+INSERT INTO `changelog` VALUES (4,59,'external database references','<p>Update External database references for:-</p>\r\n<ul>\r\n<li>Human</li>\r\n<li>Mouse</li>\r\n<li>Cow</li>\r\n<li>Chicken</li>\r\n</ul>','','handed_over','Core','N','N','N','N','N',NULL,'N/A',23,'2010-05-28 09:35:36',36,'2010-07-27 14:36:03');
+INSERT INTO `changelog` VALUES (5,59,'Update to human RepeatMasking','<ul>\r\n<li>Update to human Repeatmasking: this involves re-running the RepeatMasker analysis on toplevel slices, with the \'-nolow\' flag, so that low complexity regions are not masked. </li>\r\n</ul>','','handed_over','Genebuild','Y','N','Y','N','N',NULL,'new',5132,'2010-05-28 14:19:01',NULL,NULL);
+INSERT INTO `changelog` VALUES (6,59,'Update human otherfeatures db','<p>Update human otherfeatures database:</p>\r\n<ul>\r\n<li>New CCDS models</li>\r\n</ul>','','handed_over','Genebuild','N','N','N','N','N',NULL,'patched',5132,'2010-05-28 14:20:33',NULL,NULL);
+INSERT INTO `changelog` VALUES (8,59,'New species name meta-values with corresponding helper methods','<p>A set of new meta key-value pairs are inserted into all Core databases:</p>\r\n<ul>\r\n<li>species.production_name (a string that may be used to refer to a particular species in e.g. database tables or file names)</li>\r\n<li>species.scientific_name (the full bi- or trinomial scientific name of the species)</li>\r\n<li>species.short_name (a short string, often based on the common name, useful for labels in GUIs etc.)</li>\r\n</ul>\r\n<p>For each of these, the Bio::EnsEMBL::DBSQL::MetaContainer class now also contains a get_* method for retrieval of the corresponding meta value (get_short_name(), etc.). There is also a new get_common_name() method.</p>','','handed_over','Core','N','N','N','N','N',NULL,'N/A',896,'2010-06-21 13:29:37',NULL,NULL);
+INSERT INTO `changelog` VALUES (9,59,'ResultFeature Collection Normalisation','<p>All result_feature collections (Human & Mouse) have been normalised using a simple by read count method(RPKM), enabling more meaningful visual comparisons using the multi-wiggle displays. </p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-01 10:45:56',1273,'2010-07-21 11:26:05');
+INSERT INTO `changelog` VALUES (10,59,'Mouse IKMC xrefs and features','<p>Support mouse IKMC (International Mouse Knockout Consortium) links by creating a set of simple features to show the genomic extent of the knockouts.</p>','','handed_over','Core','N','N','N','N','N',NULL,'patched',36,'2010-06-01 10:56:32',36,'2010-07-16 09:37:58');
+INSERT INTO `changelog` VALUES (11,59,'Update Amazon data sets','<p>Update Amazon data sets for MySQL and FASTA dumps.</p>','','handed_over','Core','N','N','N','N','N',NULL,'patched',36,'2010-06-01 10:57:48',36,'2010-07-27 14:46:21');
+INSERT INTO `changelog` VALUES (12,59,'Gene name and GO term projections','<p>Assign gene names and GO terms to species where they are not well covered by projection from well-annotated species, using Compara homologies.</p>','','handed_over','Core','N','N','N','N','N',NULL,'patched',36,'2010-06-01 10:58:59',36,'2010-07-16 09:38:24');
+INSERT INTO `changelog` VALUES (13,59,'Schema patch: annotated_feature.summit','<p>The annotated_feature table now has a dedicated peak \'summit\' field (patch_58_59_c.sql). API support has been added both to the eFG and the ensembl-analysis APIs.</p>\r\n<p> </p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-01 16:18:51',1273,'2010-07-21 11:26:38');
+INSERT INTO `changelog` VALUES (14,59,'Update to human ensembl-vega','<p>Update to the human havana annotation shown in the \'Vega Havana\' gene track</p>','','postponed','Genebuild','N','Y','N','N','N',NULL,'new',161,'2010-06-01 16:33:58',NULL,NULL);
+INSERT INTO `changelog` VALUES (15,59,'Schema patch: probe.description','<p>The probe table has been patched (patch_58_59_b) to add a description column. Appropriate API support has also been added to the eFG and ensembl-analysis APIs</p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-02 10:50:35',1273,'2010-07-21 11:27:43');
+INSERT INTO `changelog` VALUES (16,59,'Schema path: regulatory_feature.binary_string_project','<p>The regulatory_feature table has been redefined (patch_58_59_d) to add a new binary_string and projected columns to store information generated from the Regulatory Build. API has also be added to the RegulatoryFeature class and associated adaptor.</p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-02 10:54:49',1273,'2010-07-21 11:28:08');
+INSERT INTO `changelog` VALUES (17,59,'Mouse Projection Regulatory Build','<p>The Mouse Regulatory Build has been regenerated using a new \'projection\' method. Core(MultiCell) RegulatoryFeatures are only be projected to these sparsely annotated cell lines if more annotation is available i.e. RegulatoryFeatures are not be built if there is no supporting evidence on the given cell line.</p>\r\n<p>This reintroduces some data from different cell lines which do not have associated \'core\' features (e.g. DNAse1) along with some new TFBS data.</p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-02 11:08:53',2,'2010-07-21 11:49:11');
+INSERT INTO `changelog` VALUES (18,59,'New chip-seq datasets','<p><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">Add ENCODE Chip-seq datasets for the following cell types:</span></p>\r\n<ul>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">K562: Update of the Current Regulatory Build for this cell line</span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">GM12878: </span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">New Regulatory Build for this cell line</span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">H1 ES: New Regulatory Build for this cell line</span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">HeLa: </span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">New Regulatory Build for this cell line</span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">HepG2: </span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">New Regulatory Build for this cell line</span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">HUVEC: </span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">No Regulatory Build for this cell line in this release </span></li>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">NHEK: </span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">New Regulatory Build for this cell line</span></li>\r\n</ul>\r\n<p><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\"><br />Add mouse TF Chip-Seq datasets from Chen et all (2008)</span></p>\r\n<ul>\r\n<li><span style=\"font-family: arial, sans-serif; font-size: small;\"><span style=\"border-collapse: collapse; font-size: 13px;\">Update of the Current Mouse ES Reg</span></span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse;\">ulatory Build</span></li>\r\n</ul>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',100304,'2010-06-02 11:24:50',100304,'2010-07-28 09:38:30');
+INSERT INTO `changelog` VALUES (19,59,'Schema change','<p>We will have the following schema patches to the Ensembl Core schema:</p>\r\n<ol>\r\n<li>Update schema version, as usual.</li>\r\n<li>Add new exception types (\'PATCH_NOVEL\' and \'PATCH_FIX\') to the assembly_exception table. This is to allow for patched assemblies.</li>\r\n<li>Modify the splicing_event table so that instead of a \'type\' field there is an \'attrib_type_id\' pointing to the attrib_type table. The short enumerated codes were too terse.</li>\r\n<li>A unique index in the object_xref table (\'object_type_idx\') is being extended to include the \'analysis_id\'. This is to allow two object Xrefs for the same object using two different analyses.</li>\r\n<li>A new meta key \'schema_type\' (with value \'core\' for Ensembl Core databases) will be inserted into all Core databases.</li>\r\n</ol>','','handed_over','Core','N','N','N','N','N',NULL,'N/A',23,'2010-06-02 13:21:16',36,'2010-07-27 14:37:17');
+INSERT INTO `changelog` VALUES (20,59,'Drosophila melanogaster update','<p>Update of D. melanogaster gene set to release 5.25 (FlyBase 2010_02).</p>','','handed_over','Core','N','Y','N','N','Y',NULL,'new',98587,'2010-06-02 15:35:39',737,'2010-07-21 11:37:03');
+INSERT INTO `changelog` VALUES (21,59,'Drosophila melanogaster update','<ul>\r\n<li>Affy mapping update for D. melanogaster 5.25</li>\r\n<li>Regulatory elements update from REDfly v2.2</li>\r\n</ul>\r\n<p> </p>','','handed_over','Funcgen','N','Y','N','N','Y',NULL,'new',98587,'2010-06-02 15:53:11',98587,'2010-07-28 13:40:44');
+INSERT INTO `changelog` VALUES (22,59,'Variation data','Import of dbSNP 131 for Human\r\n and calculation of variation consequences and tag SNPs<br />\r\nImport of the CNV probes from the Affymetrix Genome 6 array <br />\r\nImport new LRG sequences<br />\r\nCorrect population sizes (currently 1 or 0 only)<br />\r\nCorrect zebrafish display strain defaults <br />\r\nsomatic mutation substitutions from 70 genes involved in cancer (COSMIC) \r\nUpdate UniProt and DGVa data\r\n<p>Update variation consequences (in transcript_variation table ) for new gene sets in: cow, horse, chicken, platypus, mouse, orangutan</p>\r\n','','handed_over','Variation','N','N','N','N','N',NULL,'N/A',3,'2010-06-02 17:15:57',3,'2010-07-21 13:25:43');
+INSERT INTO `changelog` VALUES (23,59,'Update of mouse gene set','<p>Update of mouse gene set incorporating new Vega genes, implementing new code for HavanaAdder.</p>','','handed_over','Genebuild','N','Y','N','Y','Y',NULL,'patched',97238,'2010-06-02 21:21:11',NULL,NULL);
+INSERT INTO `changelog` VALUES (24,59,'Selenocysteine update','<p>Update 172 transcripts across 25 species to remove 3<span class=\"misspell\"> base pair</span> introns where there should be a selenocysteine.</p>\r\n<p>The following species are affected:</p>\r\n<ul>\r\n<li>bos taurus</li>\r\n<li>choloepus hoffmanni </li>\r\n<li>dasypus novemcinctus </li>\r\n<li>dipodomys ordii </li>\r\n<li>echinops telfairi </li>\r\n<li>equus caballus </li>\r\n<li>erinaceus europaeus </li>\r\n<li>felis catus </li>\r\n<li>gallus gallus </li>\r\n<li>gorilla gorilla </li>\r\n<li>macropus eugenii </li>\r\n<li>microcebus murinus </li>\r\n<li>myotis lucifugus </li>\r\n<li>ochotona princeps </li>\r\n<li>ornithorhynchus anatinus </li>\r\n<li>otolemur garnettii</li>\r\n<li>pongo pygmaeus </li>\r\n<li>procavia capensis </li>\r\n<li>pteropus vampyrus </li>\r\n<li>sorex araneus </li>\r\n<li>spermophilus tridecemlineatus </li>\r\n<li>tarsius syrichta </li>\r\n<li>tupaia belangeri </li>\r\n<li>tursiops truncatus </li>\r\n<li>vicugna pacos </li>\r\n</ul>','','handed_over','Genebuild','N','N','N','N','N',NULL,'patched',29,'2010-06-03 09:42:53',NULL,NULL);
+INSERT INTO `changelog` VALUES (25,59,'New human assembly patches','<p>Update human assembly to include sequence for the new assembly patches provided by the GRC (patch_release_1).</p>\r\n<ul>\r\n<li>Assembly patches are toplevel and non-reference</li>\r\n</ul>','','handed_over','Genebuild','Y','N','Y','N','N',NULL,'new',5132,'2010-06-03 10:09:15',NULL,NULL);
+INSERT INTO `changelog` VALUES (26,59,'Human Regulatory Build - 6 New cell lines & data update','<p>The Human Regulatory Build has been regenerated to incorporate the 5 new ENCODE cell lines: GM12878, H1ES, HeLa, HepG2, and NHEK.</p>\r\n<p>The new data has also been used to update the core MultiCell and existing cell line specific build i.e. K562, IMR90, GM06990, CD4. </p>\r\n<p> </p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-03 10:28:02',100304,'2010-07-28 09:55:38');
+INSERT INTO `changelog` VALUES (27,59,'Ensembl-Havana merge (GENCODE gene set)','<p>There will be a new Ensembl-Havana merge gene set incorporating new annotation from Vega database.</p>','','postponed','Genebuild','N','Y','Y','Y','N',NULL,'new',9335,'2010-06-03 10:32:06',NULL,NULL);
+INSERT INTO `changelog` VALUES (28,59,'Variation API','<p>Add a new 1000 Genomes set<br />modify call for nearest gene to variation feature<br />HGVS nomenclature on proteins</p>\r\nChanges to API and schema to separate somatic and germline variations','','handed_over','Variation','N','N','N','N','N',NULL,'new',99616,'2010-06-03 10:59:21',3,'2010-07-21 11:58:01');
+INSERT INTO `changelog` VALUES (29,59,'Additional mapping for marmoset','<p>An additional contig to scaffold mapping for unplaced and unlocalized scaffolds</p>\r\n<p>Update of the corresponding gene coordinates</p>','','handed_over','Genebuild','N','N','Y','N','N',NULL,'patched',97245,'2010-06-03 10:59:58',NULL,NULL);
+INSERT INTO `changelog` VALUES (30,59,'Variation schema','<p><br />New enums for 1000 Genomes and also for precious SNPs in the validation status column<br />add schema type key into the meta table</p>','','handed_over','Variation','N','N','N','N','N',NULL,'patched',99616,'2010-06-03 11:01:15',3,'2010-07-21 11:47:00');
+INSERT INTO `changelog` VALUES (31,59,'Mouse cDNA update','<p>Mouse cDNA update</p>','','handed_over','Genebuild','N','N','N','N','N',NULL,'new',97245,'2010-06-03 11:01:25',NULL,NULL);
+INSERT INTO `changelog` VALUES (32,59,'cDNA based gene annotation of human assembly patches','<p>Annotate human assembly patches with cDNA based gene models.</p>','','handed_over','Genebuild','N','N','N','N','N',NULL,'patched',14183,'2010-06-03 11:07:24',NULL,NULL);
+INSERT INTO `changelog` VALUES (33,59,'Array Mapping','<p>Array mapping and Transcript xrefs have been regenerated for species which have updated genome assemblies or genebuilds.</p>','','handed_over','Funcgen','N','N','N','N','Y',NULL,'N/A',1273,'2010-06-03 11:12:51',100304,'2010-07-28 09:40:07');
+INSERT INTO `changelog` VALUES (34,59,'Mouse ChIP-Seq data','<p><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse; color: #555555; white-space: pre;\">Transcription Factor Chip-Seq data has been added (Chen </span><span style=\"font-size: 13px; border-collapse: collapse; color: #555555; white-space: pre;\"><em>et al</em></span><span style=\"font-family: arial, sans-serif; font-size: 13px; border-collapse: collapse; color: #555555; white-space: pre;\"> 2008)</span></p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-03 11:36:54',100304,'2010-07-28 09:55:05');
+INSERT INTO `changelog` VALUES (35,59,'Ontology database','<p>We will provide the ensembl_ontology_59 database with updated data from Gene Ontology (GO) and Sequence Ontology (SO).</p>','','handed_over','Core','N','N','N','N','N',NULL,'new',896,'2010-06-03 12:07:02',NULL,NULL);
+INSERT INTO `changelog` VALUES (36,59,'Saccharomyces cerevisiae core database','<p>Core database from Ensembl Genomes (updated March 2010 from SGD, currently in EG5) in 58 schema, patched to 59 schema when sql available. Also corresponding other_features database containing ESTs.</p>','Contact arnaud@ebi.ac.uk about yeast databases','handed_over','Genebuild','Y','Y','Y','N','N',NULL,'new',101216,'2010-06-03 14:58:52',737,'2010-07-21 11:36:41');
+INSERT INTO `changelog` VALUES (37,59,'Saccharomyces cerevisiae funcgen database','<p>Database containing Affy array mapping data for Saccharomyces cerevisiae. Currently part of Ensembl Genomes Release 5. Currently 58, will be patched to 59.</p>','Contact arnaud@ebi.ac.uk','handed_over','Funcgen','N','N','N','N','Y',NULL,'new',101216,'2010-06-03 15:00:29',101255,'2010-07-28 13:49:46');
+INSERT INTO `changelog` VALUES (38,59,'Saccharomyces cerevisiae variation database','<p>Variation database containing data from Saccharomyces Resequencing Project at the Sanger Institute. Present in Ensembl Genomes release 5 as schema 58. Will be patched to 59.</p>','contact: Arnaud Kerhornou \r\narnaud@ebi.ac.uk','handed_over','Variation','N','N','N','N','N',NULL,'new',101216,'2010-06-03 15:02:01',101255,'2010-07-28 13:52:24');
+INSERT INTO `changelog` VALUES (39,59,'Drosophila melanogaster','<p>Drosophila melanogaster variation database based on DPGP 1.0</p>','','handed_over','Variation','N','Y','N','N','N',NULL,'new',98587,'2010-06-03 17:15:59',98587,'2010-07-28 13:41:23');
+INSERT INTO `changelog` VALUES (40,59,'external db id','<p>Fixing dna align feature tables of otherfeatures databases for various species by adding external db ids</p>\r\n<p> </p>\r\n<p>WARNING, missing external_db_ids from Anolis_carolinensis DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Bos_taurus DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Bos_taurus DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Danio_rerio DATABASE_CORE dna_align_feature<br />WARNING, missing external_db_ids from Danio_rerio DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Drosophila_melanogaster DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Equus_caballus DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Saccharomyces_cerevisiae DATABASE_OTHERFEATURES dna_align_feature<br />WARNING, missing external_db_ids from Taeniopygia_guttata DATABASE_OTHERFEATURES dna_align_feature</p>\r\n<p> </p>','','declared','Genebuild','N','N','N','N','N',NULL,'patched',1011,'2010-06-04 12:13:42',NULL,NULL);
+INSERT INTO `changelog` VALUES (41,59,'Pairwise alignments','<p>Add new haplotype alignments for human vs high coverage blastz-net alignments<br /><br /> * H.sap-P.tro<br /> * H.sap-G.gor<br /> * H.sap-P.pyg<br /> * H.sap-M.mul<br /> * H.sap-M.mus<br /> * H.sap-R.nor<br /> * H.sap-C.fam<br /> * H.sap-B.tau<br /> * H.sap-S.scr<br /> * H.sap-E.cab<br /> * H.sap-O.ana<br /> * H.sap-M.dom<br /> * H.sap-G.gal<br /><br />New blastz-net due to changes in marmoset assembly<br /><br /> * H.sap-C.jac</p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:15:46',49918,'2010-07-16 09:44:17');
+INSERT INTO `changelog` VALUES (42,59,'Multiple alignments','<p> * 33 way epo low coverage<br /> * 6 way epo primates<br /> * 11 way epo eutherian mammals<br /> * Add MT alignments for fish, 11 and 33 way EPO alignments<br /> * Map changes to marmoset assembly in 16-way mecator/pecan placental mammals</p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:17:11',49918,'2010-07-16 09:44:49');
+INSERT INTO `changelog` VALUES (43,59,'Compara dumps','<p> * EMF dumps for 6 way EPO multiple alignments<br /> * EMF dumps for 11 way EPO multiple alignments<br /> * EMF dumps for 16 way mecator/pecan multiple alignments<br /> * EMF dumps for 33 way EPO multiple aligments<br /> * BED files for 33 way GERP constrained elements<br /> * EMF dumps for GeneTrees</p>\r\n<p> </p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:18:11',96753,'2010-07-27 14:39:16');
+INSERT INTO `changelog` VALUES (44,59,'Families','<p>Updated MCL families including all Ensembl transcript isoforms and newest Uniprot Metazoa.<br /><br /> * Clustering by MCL<br /> * Multiple Sequence Alignments with MAFFT<br /> * Family stable ID mapping</p>\r\n<p> </p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:19:02',49918,'2010-07-16 09:45:08');
+INSERT INTO `changelog` VALUES (45,59,'Gene Homlogies','<p>GeneTrees with new/updated genebuilds and assemblies<br /><br /> * Updated build of ncRNA trees<br /> * Clustering using hcluster_sg<br /> * Multiple Sequence Alignments using consistency-based MCoffee meta-aligner<br />(mafftgins+muscle+kalign+probcons) and exon-skipping aware \"skipper\" algorithm<br /> * Homology inference including the recent \'possible_ortholog\' type and \'putative gene split\' and<br />\'contiguous gene split\' exceptions<br /> * Pairwise gene-based dN/dS calculations for high coverage species pairs only<br /> * GeneTree stable ID mapping</p>\r\n<p> </p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:20:02',49918,'2010-07-16 09:45:33');
+INSERT INTO `changelog` VALUES (46,59,'Schema changes','<p>* Addition of extra column in dnafrag table to hold information on whether the fragment is reference or non-reference.</p>\r\n<p> </p>','','handed_over','Compara','N','N','N','N','N',NULL,'N/A',49918,'2010-06-04 12:20:45',49918,'2010-07-16 09:45:52');
+INSERT INTO `changelog` VALUES (47,59,'assembly fixes','<p>The assembly / seq region tables of otherfeatures databaess for these species will be sync. with their core databases bos_taurus_otherfeatures_58_4g<br />sus_scrofa_otherfeatures_58_9b<br />pan_troglodytes_otherfeatures_58_21m<br />danio_rerio_otherfeatures_58_8d<br />pongo_pygmaeus_otherfeatures_58_1d<br /><br /></p>','','handed_over','Genebuild','Y','N','N','N','N',NULL,'patched',1011,'2010-06-04 12:25:30',5132,'2010-07-16 13:16:15');
+INSERT INTO `changelog` VALUES (48,59,'human cdna update','<p>new human cdna update database with integrated assembly patches</p>','','handed_over','Genebuild','Y','Y','N','N','N',NULL,'new',1011,'2010-06-04 12:29:08',NULL,NULL);
+INSERT INTO `changelog` VALUES (49,59,'Change name of EMBL database to European Nucleotide Archive','<p>Change name of EMBL database to European Nucleotide Archive to reflect the new official name. External reference sources will be the most obvious change.</p>','','declared','Core','N','N','N','N','N',NULL,'patched',36,'2010-06-04 12:36:07',NULL,NULL);
+INSERT INTO `changelog` VALUES (50,59,'Meta schema_type','<p>A meta entry has been added to the eFG DBs to capture the schema type \'funcgen\' (patch_58_59_e).</p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-08 14:32:26',100304,'2010-07-28 09:31:06');
+INSERT INTO `changelog` VALUES (51,59,'variation displays','The LRG display now has tables listing differences between the LRG and the reference sequence.<br />\r\nThe context panel of the variation page has been updated to show if the variant overlaps a regulatory region, structural variants or conserved region\r\n','','handed_over','Variation','N','N','N','N','N',NULL,'N/A',3,'2010-06-09 17:29:51',3,'2010-07-21 13:24:37');
+INSERT INTO `changelog` VALUES (52,59,'Schema patch: result_feature partitions','<p>The result_feature table partitions have been modified slightly to reflect the true default zoom levels in the \'Region in Detail\' view (patch_58_59_f). Collection data has been regenerated accordingly.</p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-10 13:19:52',100304,'2010-07-28 09:40:54');
+INSERT INTO `changelog` VALUES (53,59,'Meta table changes','<p>These changes are intended to solidify the requirements for names in Ensembl and will reduce the amount of name conversion which occurs in the codebase.</p>\r\n<table class=\"confluenceTable\">\r\n<tbody>\r\n<tr>\r\n<th class=\"confluenceTh\">meta key</th> <th class=\"confluenceTh\">usage</th> <th class=\"confluenceTh\">required</th> <th class=\"confluenceTh\">stable</th> <th class=\"confluenceTh\">regular expression</th> <th class=\"confluenceTh\">example value</th>\r\n</tr>\r\n<tr>\r\n<td class=\"confluenceTd\">species.production_name</td>\r\n<td class=\"confluenceTd\">Used for a computing scenario e.g. writing a file to disk.</td>\r\n<td class=\"confluenceTd\">yes</td>\r\n<td class=\"confluenceTd\">yes</td>\r\n<td class=\"confluenceTd\">\r\n$[a-z0-9_]+^</pre>\r\n</div>\r\n</div>\r\n</td>\r\n<td class=\"confluenceTd\">homo_sapiens</td>\r\n</tr>\r\n<tr>\r\n<td class=\"confluenceTd\">species.scientific_name</td>\r\n<td class=\"confluenceTd\">The full name of the species, which should replace the call\r\nMetaContainer->get_Species()->binomial()\r\n</td>\r\n<td class=\"confluenceTd\">yes</td>\r\n<td class=\"confluenceTd\">no</td>\r\n<td class=\"confluenceTd\">-</td>\r\n<td class=\"confluenceTd\">Homo sapiens</td>\r\n</tr>\r\n<tr>\r\n<td class=\"confluenceTd\">species.common_name</td>\r\n<td class=\"confluenceTd\">The common name of the species, which can equal the value from taxonomy</td>\r\n<td class=\"confluenceTd\">no</td>\r\n<td class=\"confluenceTd\">no</td>\r\n<td class=\"confluenceTd\">-</td>\r\n<td class=\"confluenceTd\">human</td>\r\n</tr>\r\n<tr>\r\n<td class=\"confluenceTd\">species.short_name</td>\r\n<td class=\"confluenceTd\">A name which is short enough to be used in space-constrained areas (such as tabs on the web site)</td>\r\n<td class=\"confluenceTd\">yes</td>\r\n<td class=\"confluenceTd\">no</td>\r\n<td class=\"confluenceTd\">-</td>\r\n<td class=\"confluenceTd\">human</td>\r\n</tr>\r\n</tbody>\r\n</table>','The link between core to compara and web code to compara is a perfect example of the problem and with the introduction of more specific names (strain types from Ensembl Genomes and trinomial named species) this is something we need to put a stop to now.','handed_over','Core','N','N','N','N','N',NULL,'N/A',737,'2010-06-11 11:27:13',2,'2010-08-05 10:27:39');
+INSERT INTO `changelog` VALUES (54,59,'Update mouse otherfeatures db','<p>Update mouse otherfeatures db</p>\r\n<ul>\r\n<li>New CCDS models</li>\r\n</ul>','','handed_over','Genebuild','N','Y','N','N','N',NULL,'patched',5132,'2010-06-18 14:46:05',NULL,NULL);
+INSERT INTO `changelog` VALUES (55,59,'miRanda miRNA Target update','<p>The human miRanda miRNA Targets set has been updated and a new mouse set has been added. These have been supplied by the Enright lab at the EBI . NOTE: These were generated using a revised conservative methodology and hence are a subset of those available via http://www.ebi.ac.uk/enright-srv/microcosm/htdocs/targets/ </p>','','handed_over','Funcgen','N','N','N','N','N',NULL,'N/A',1273,'2010-06-25 14:50:49',NULL,NULL);
+INSERT INTO `changelog` VALUES (56,59,'Public plugins','<p class=\"space-below\">We are overhauling public-plugins/admin, as it is very out of date. This will probably affect very few users, but for those that do use it, there will be quite a few changes in the next couple of releases so we wanted to give plenty of notice!</p>\r\n\r\n<p class=\"space-below\">Firstly, we are creating a new public plugin, \'orm\', which will reduce and ultimately remove our reliance on Class::DBI::Sweet by replacing it with Rose::DB::Object. Access to non-essential web functionality, including user accounts, will be ported to this plugin over the coming releases. This plugin will also be a requirement for the admin plugin, since the new CRUD interface uses Rose for its ORM (object relational mapping) component.</p>\r\n\r\n<p class=\"space-below\">Note that the core web code (in /modules) is in the process of being changed to use DBI directly for access to the ensembl_website database, for example for help and news. This is so that simple mirror sites do not need to install the Rose ORM suite and all its dependencies.<p>\r\n\r\n<p>If you have any questions, please email us at dev@ensembl.org.</p>',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',2,'2010-07-21 10:40:21',NULL,NULL);
+INSERT INTO `changelog` VALUES (57,59,'Removal of Object::Help','<p>The module EnsEMBL::Web::Object::Help and its associated Factory, as well as the EnsEMBL::Web::Data classes for help records, have been removed from the web code, as they were no longer needed. If you have any custom modules in the Help namespace (e.g. Components), please change them to use Hub. See for example EnsEMBL::Web::Component::Help::View for examples of how to substitute \'hub\' for \'object\' and how to get data from the ensembl_website database using DBSQL::WebsiteAdaptor (you may need to extend the adaptor in your plugin).</p>\r\n',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',2,'2010-07-27 16:26:36',NULL,NULL);
+INSERT INTO `changelog` VALUES (58,59,'Key and Zmenu for Xref','The xref display and description is now fixed on the vertical drawing (whole genome), now showing the exact xref and associated gene. Also a key has been added to describe which pointer is which. And finally the Zmenu is now working properly describing the gene and xref accordingly.',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',99923,'2010-07-29 11:38:09',NULL,NULL);
+INSERT INTO `changelog` VALUES (59,60,'data','<p>update of UniProt identifier links including phenotype information <br /> import of new information from NHGRI <br /> import of new data sets for structural variants from DGVa<br /> import of an expanded data set for all short somatic sequence variants from COSMIC <br /> GVF (Genome Variation Format) dumps for all variants<br /> update of variant consequences for new human gene set</p>\r\n<p>update of variant consequences for new zebrafish assembly and gene setimport new set of 150,000 Zebrafish variants</p>\r\n<p>import of variants submitted on LRG_7 from Uniprot</p>\r\n<p> </p>',NULL,'handed_over','Variation',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',3,'2010-08-13 10:36:14',3,'2010-10-06 12:13:22');
+INSERT INTO `changelog` VALUES (60,60,'Array Mapping','<p>The array mapping pipeline will be run for those species which have new assemblies, gene build or new array designs. This includes an update to the latest version of the Phalanx OneArray for human.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',1273,'2010-08-13 11:10:09',1273,'2010-11-05 14:30:02');
+INSERT INTO `changelog` VALUES (61,60,'BindingMatrix','<p>A new BindingMatrix class will represent position weight matrices (PWMs) loaded from Jaspar or inferred directly from Chip-Seq data. This will ultimately be able to identify the consequence of a sequence change at a given location, with respect to the PWM score. patch_59_60_c.sql contains the relevant changes to update the schema to support this data.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-08-13 11:19:34',100304,'2010-11-05 10:49:29');
+INSERT INTO `changelog` VALUES (62,60,'MotifFeature','<p>A new MotifFeature class has been added to represent the genomic mapping of a position weight matrix (BindingMatrix). patch_59_60_c.sql contains the relevant schema updates.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-08-13 11:22:44',100304,'2010-11-05 10:49:09');
+INSERT INTO `changelog` VALUES (63,60,'Schema patch: Schema version','<p>patch_59_60_a.sql updates the meta table, changing the schema_version meta_value to 60.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-08-13 11:24:05',100304,'2010-11-05 10:49:59');
+INSERT INTO `changelog` VALUES (64,60,'Schema patch: associated_feature_type','<p>patch_59_60_b.sql updates the associated_feature_type table to support feature_type to feature_type associations. The relevant adaptors have also been updated to reflect the new table fields and values.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-08-13 11:26:09',100304,'2010-11-05 10:50:19');
+INSERT INTO `changelog` VALUES (65,60,'RegulatoryBuild update','<p>The human RegulatoryBuild has been updated and re-annotated based on the new ChIP-Seq data sets.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',1273,'2010-08-13 11:30:20',100304,'2010-11-05 10:47:39');
+INSERT INTO `changelog` VALUES (66,60,'Position Weight Matrix (PWM) mapping and visualisation','<p>PWM mappings which used to be associated with the RegulatoryFeatures, are now associated with the AnnotatedFeatures representing the specific Transcription Factor Binding Site predictions. This utilises the new MotifFeature and BindingMatrix classes. These new data are available as new tracks in the Regulation panel as well as Region in Detail.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',1273,'2010-08-13 11:33:19',100304,'2010-11-05 10:46:50');
+INSERT INTO `changelog` VALUES (67,60,'New chip-seq datasets from ENCODE','<p>93 new ENCODE Chip-Seq datasets for existing cell lines will be added.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',NULL,NULL,100304,'2010-11-05 10:46:00');
+INSERT INTO `changelog` VALUES (68,60,'Update to human vega annotation','<p>An update to Vega human annotation</p>',NULL,'handed_over','Genebuild','N','Y','N','N','N',NULL,'new',161,'2010-08-13 15:12:56',161,'2010-09-23 14:28:41');
+INSERT INTO `changelog` VALUES (69,60,'Ensembl marts for release 60','<p>Release 60 Ensembl marts (all species)<br />Ensembl Genes 60<br /> • Addition of new species Ailuropoda melanoleuca (Panda)</p>\r\n<p> • GNF data has been updated via Gene Expression Atlas (http://www.ebi.ac.uk/gxa/)</p>\r\n<p> • Germ line and Somatic mutations are separated in both filter and attributes.</p>\r\n<p>Ensembl variation 60<br /> • Ensembl Variation mart and Ensembl Gene mart are connected via ensembl gene stable-ids for Human</p>',NULL,'handed_over','Mart',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',NULL,NULL,25629,'2010-11-03 10:21:15');
+INSERT INTO `changelog` VALUES (70,60,'Ontology database','A new ontology database (\"ensembl_ontology_60\") will be built using the latest data from GO and SO.',NULL,'handed_over','Core',NULL,NULL,NULL,NULL,NULL,NULL,'new',896,'2010-08-19 09:55:26',896,'2010-08-24 12:01:02');
+INSERT INTO `changelog` VALUES (71,60,'Gencode gene set update','Update to the Ensembl/Havana Gencode gene set using the latest Vega gene set.',NULL,'handed_over','Genebuild','N','Y','Y','N','N',NULL,'new',9335,'2010-08-19 09:58:12',9335,'2010-08-25 14:44:42');
+INSERT INTO `changelog` VALUES (72,60,'Human cDNA update','<p>Updated set of cDNA alignments to the human genome.</p>',NULL,'handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'new',14183,'2010-08-19 10:00:06',14183,'2010-09-24 09:38:40');
+INSERT INTO `changelog` VALUES (73,60,'Rabbit chromosomes','Chromosome mapping added for the rabbit genome\r\nCoordinates updated accordingly',NULL,'handed_over','Genebuild','Y','Y','Y','N','N',NULL,'patched',97245,'2010-08-19 10:07:26',97245,'2010-08-19 12:00:37');
+INSERT INTO `changelog` VALUES (74,60,'Human (GRCh37) assembly patch release 2','<p>Addition of the GRCh37 patch release 2 patches. These are toplevel, non-reference regions of the assembly.</p>',NULL,'handed_over','Genebuild','Y',NULL,'Y',NULL,NULL,NULL,'new',14183,'2010-08-19 10:11:38',14183,'2010-09-24 09:40:02');
+INSERT INTO `changelog` VALUES (75,60,'Updated human otherfeatures db: EST alignments','Human ESTs were realigned.\r\nNew EST-based genes were produced from these EST alignments.',NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'new',5132,'2010-08-19 10:11:45',5132,'2010-08-24 11:55:59');
+INSERT INTO `changelog` VALUES (76,60,'Panda genebuild','<p>The first genebuild for the panda genome</p>',NULL,'handed_over','Genebuild','Y','Y','Y','N','N',NULL,'new',97245,'2010-08-19 10:13:59',97245,'2010-09-06 09:12:32');
+INSERT INTO `changelog` VALUES (77,60,'Update human otherfeatures db: new CCDS import','Update to CCDS set for human',NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'new',5132,'2010-08-19 10:15:17',5132,'2010-08-24 11:56:25');
+INSERT INTO `changelog` VALUES (78,60,'Updated mouse otherfeatures db: New CCDS import','<p>Update to CCDS set for mouse</p>',NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'N/A',5132,'2010-08-19 10:16:02',5132,'2010-09-23 21:46:32');
+INSERT INTO `changelog` VALUES (79,60,'cDNA based gene annotation of human assembly patches','<p>Annotate the human assembly patches using Exonerate\'s cDNA2genome model, which aligns cDNAs to the genome using annotation identifying the coding regions of the cDNAs.</p>','This annotation will be stored in the other features database.','handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'new',14183,'2010-08-19 10:17:33',14183,'2010-09-28 09:33:18');
+INSERT INTO `changelog` VALUES (80,60,'Families','<p>Updated MCL families including all Ensembl transcript isoforms and newest Uniprot Metazoa</p>\r\n<p>Clustering by MCL</p>\r\n<p>Multiple Sequence Alignments with MAFFT</p>\r\n<p>Family stable ID mapping</p>',NULL,'handed_over','Compara',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',NULL,NULL,49918,'2010-11-05 10:53:26');
+INSERT INTO `changelog` VALUES (81,60,'Gene Homologies','<p>GeneTrees with new/updated genebuilds and assemblies</p>\r\n<p>Updated build of ncRNA trees</p>\r\n<p>Clustering using hcluster_sg</p>\r\n<p>Multiple Sequence Alignments using consistency-based MCoffee meta-aligner (mafftgins+muscle+kalign+probcons) and exon-skipping aware \"skipper\" algorithm</p>\r\n<p>Homology inference including the recent \'possible_ortholog\' type and \'putative gene split\' and \'contiguous gene split\' exceptions</p>\r\n<p>Pairwise gene-based dN/dS calculations for high coverage species pairs only</p>\r\n<p>GeneTree stable ID mapping</p>',NULL,'handed_over','Compara',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',22288,'2010-08-19 11:06:43',49918,'2010-11-05 10:53:54');
+INSERT INTO `changelog` VALUES (82,60,'Zebrafish genebuild','<p>Full genebuild on the new Zv9 assembly</p>','This genebuild will include RNA-Seq gene models','handed_over','Genebuild','Y','Y','Y','Y','Y',NULL,'new',29,'2010-08-23 09:37:17',29,'2010-11-05 10:49:48');
+INSERT INTO `changelog` VALUES (83,60,'Gene name and GO term projections','<p>Gene names and GO xrefs will be projected from species where there is high coverage to species where there is lower coverage. Panda will be included as a target for these projections.</p>',NULL,'handed_over','Core','N','N','N','N','N',NULL,'patched',36,'2010-08-24 09:40:04',23,'2010-11-05 10:46:30');
+INSERT INTO `changelog` VALUES (84,60,'external database references','<p>Update external database references for human, mouse and Xenopus</p>',NULL,'handed_over','Core',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',23,'2010-08-24 11:10:08',23,'2010-11-05 10:50:14');
+INSERT INTO `changelog` VALUES (85,60,'GO Xrefs are now Ontology Xrefs','<p>The go_xref table is renamed to ontology_xref. The Bio::EnsEMBL::GoXref Perl module is renamed to Bio::EnsEMBL::OntologyXref.</p>',NULL,'handed_over','Core',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',NULL,NULL,23,'2010-11-05 10:50:50');
+INSERT INTO `changelog` VALUES (86,60,'Pairwise Alignments','<p>Lastz-net alignments</p>\r\n<ul>\r\n<li>H.sap-A.mel</li>\r\n<li>H.sap-O.cun</li>\r\n<li>C.fam-A.mel</li>\r\n</ul>\r\n<p>Blat-alignments</p>\r\n<ul>\r\n<li>H.sap-D.rer </li>\r\n<li>M.mus-D.rer</li>\r\n<li>R.nor-D.rer</li>\r\n<li>G.gal-D.rer</li>\r\n<li>T.rub-D.rer</li>\r\n<li>D.rer-X.tro</li>\r\n<li>C.int-D.rer</li>\r\n<li>C.sav-D.rer</li>\r\n<li>G.acu-D.rer</li>\r\n<li>O.lat-D.rer</li>\r\n<li>D.rer-T.nig</li>\r\n</ul>\r\n<p>Non-reference alignments for human vs high coverage blastz-net alignments</p>\r\n<ul>\r\n<li>H.sap-P.tro </li>\r\n<li>H.sap-G.gor</li>\r\n<li>H.sap-P.pyg</li>\r\n<li>H.sap-M.mul</li>\r\n<li>H.sap-M.mus</li>\r\n<li>H.sap-R.nor</li>\r\n<li>H.sap-C.fam</li>\r\n<li>H.sap-B.tau</li>\r\n<li>H.sap-S.scr</li>\r\n<li>H.sap-E.cab</li>\r\n<li>H.sap-O.ana</li>\r\n<li>H.sap-M.dom</li>\r\n<li>H.sap-G.gal</li>\r\n</ul>',NULL,'handed_over','Compara',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',22288,'2010-08-24 16:41:35',49918,'2010-11-05 10:54:21');
+INSERT INTO `changelog` VALUES (87,60,'Multiple alignments','<p>34 way epo low coverage</p>\r\n<p>12 way epo eutherian mammals</p>\r\n<p>5 way epo fish</p>',NULL,'handed_over','Compara',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',22288,'2010-08-24 16:43:34',49918,'2010-11-05 10:55:00');
+INSERT INTO `changelog` VALUES (88,60,'Mouse cDNA update','<p>Updated set of cDNA alignments to the mouse genome.</p>',NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'new',101214,'2010-08-24 16:47:56',101214,'2010-09-27 14:19:42');
+INSERT INTO `changelog` VALUES (89,60,'Flagging Translation attribute where the evidence was removed','<p>Add a flag to the translation where a human Ensembl translation used as evidence was removed from the current human database. These are indicated on the web display by colouring them in grey on transcript supporting evidence view.</p>',NULL,'handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'patched',101214,'2010-08-24 16:57:29',161,'2010-11-04 14:51:23');
+INSERT INTO `changelog` VALUES (90,60,'Flagging Translation attribute where the Uniprot evidence was removed','<p>Add a flag to the translation where a supporting evidence from Uniprot was removed from Uniprot database. These are indicated on the web display by colouring them in grey on transcript supporting evidence view.</p>',NULL,'handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'patched',101214,'2010-08-24 17:02:12',161,'2010-11-04 14:52:16');
+INSERT INTO `changelog` VALUES (91,60,'Updating the ENCODE excluded regions','Update of the ENCODE excluded regions',NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'patched',9335,'2010-08-25 14:44:25',9335,'2010-08-26 17:03:46');
+INSERT INTO `changelog` VALUES (92,60,'API and schema change','<p>schema change for ensembl genomes to store the population size for each frequency calculation</p>',NULL,'handed_over','Variation',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',3,'2010-08-25 16:16:39',3,'2010-10-06 12:06:41');
+INSERT INTO `changelog` VALUES (93,60,'Fix duplicate transcript attributes','<p>Duplicate transcript attributes removed</p>',NULL,'handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',5132,'2010-08-31 09:48:23',5132,'2010-09-01 17:09:03');
+INSERT INTO `changelog` VALUES (94,60,'Translations removed for retrotransposed transcripts',NULL,NULL,'handed_over','Genebuild','N','N','N','N','N',NULL,'patched',97245,'2010-09-01 13:30:12',97245,'2010-09-01 13:40:43');
+INSERT INTO `changelog` VALUES (95,60,'homo_sapiens rnaseq data','<p>Rnaseq data from transcriptome sequencing done by illumina on human tissues will be provided in a stand-alone database, ie no mart / compara relationships.</p>\r\n<p> </p>\r\n<p>Core, web and releaes coordinatoer has been informed.</p>','Rnaseq data from transcriptome sequencing done by illumina on human tissues will be provided in a stand-alone database, ie no mart / compara relationships.\r\n\r\n\r\nCore, web and releaes coordinatoer has been informed. ','declared','Genebuild','N','N','N','N','N',NULL,'N/A',1011,'2010-09-06 15:12:14',NULL,NULL);
+INSERT INTO `changelog` VALUES (96,60,'Synteny','<p>H.sap-C.jac</p>\r\n<p>H.sap-O.cun</p>',NULL,'handed_over','Compara',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',49918,'2010-09-07 11:34:08',49918,'2010-11-05 10:55:16');
+INSERT INTO `changelog` VALUES (97,60,'Schema patch: probe_feature.cigar_line','<p>patch_59_60_d.sql The probe_feature table has been patched to change the cigar_line field to a varchar from a free text field.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-09-08 17:12:02',1273,'2010-11-05 14:30:42');
+INSERT INTO `changelog` VALUES (98,60,'Schema patch: regulatory_attribute.attribute_table_name','<p>patch_59_60_e.sql The regulatory_attribute table has been modified to allow \'motif\' as an attribute_feature_table.</p>',NULL,'handed_over','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'patched',1273,'2010-09-09 11:24:36',1273,'2010-11-05 14:31:16');
+INSERT INTO `changelog` VALUES (99,60,'Large scale changes to webcode','<p>There are a number of changes to how web pages are configured and rendered which will affect plugin developers, most notably to EnsEMBL::Web::Configuration and EnsEMBL::Web::Document::HTML modules, and $SiteDefs::OBJECT_TO_SCRIPT</p><p>See <a href=\"/info/docs/webcode/changes_60.html\">here</a> for full details.</p>',NULL,'handed_over','Web','N','N','N','N','N','N','N/A',97803,'2010-10-01 16:01:45',NULL,NULL);
+INSERT INTO `changelog` VALUES (100,60,'Autocomplete Gene searching on Location pages','<p>The navigation bar on location pages has been changed. Locations can now be typed in one input box, rather than three, and there is a new input to search for genes.</p>\r\n<p>This new box features an autocomplete dropdown for all genes with xref display labels, and will take you to the <strong>location</strong> of the gene you searched for.</p>','Fixed some of Simon\'s typos :)','handed_over','Web','N','N','N','N','N','N','N/A',97803,'2010-10-22 15:48:08',2,'2010-11-05 12:15:27');
+INSERT INTO `changelog` VALUES (101,60,'History and Bookmarks in tabs','<p>When you are logged in, recent browsing history is stored on dropdowns accessible from the tabs in the header of the website (up to 5 links per tab). Up to 5 bookmarks are also available from these dropdowns, ordered by most frequently used.</p>\r\n<p> </p>\r\n<p>There is also a dropdown from the species tab, providing quick access to all species home pages. This is available even if you are not logged in.</p>',NULL,'handed_over','Web','N','N','N','N','N','N','N/A',97803,'2010-10-22 15:53:30',2,'2010-11-05 12:16:41');
+INSERT INTO `changelog` VALUES (102,60,'Gene Ontology view','<p>The Gene Ontology page on the Transcript page has changed. Instead there is now a <strong>Gene Ontology</strong> sub-menu with an <strong>Ontology Image</strong> and an <strong>Ontology Table</strong>.</p>\r\n<p>The image visualises the term graph of Go terms and the terms closest in the goslim and goa subset for cellular_component, biological_process and molecular_function.</p>\r\n<p>The table lists the go terms for forcellular_component, biological_process and molecular_function and thier closes term(s) in the goslim and goa subset.</p>\r\n<p> </p>\r\n<p>Both new pages make use of the Ontology API, and the Ontology image uses EnsEMBL::Web::Tools::OntologyVisualisation. <strong>In principle this could be used with any OBO ontology</strong>.</p>\r\n<p> </p>',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',101273,'2010-10-26 14:49:52',2,'2010-11-05 12:18:15');
+INSERT INTO `changelog` VALUES (103,60,'Transcript xrefs (external references) on gene page','<p>For genes, on the external references page, we now list an additional table with the all xrefs (external references) of all transcripts of the gene. As this can be a large number, a subset is show by default. this defaults can be changed using the Configure this page link.</p>',NULL,'declared','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',101273,'2010-10-26 14:54:25',NULL,NULL);
+INSERT INTO `changelog` VALUES (104,60,'Download as CSV','<p>Pages with tabulated data now have a \"Download view as CSV\" button at the bottom of the left hand menu. These files can be opened in Excel or other spreadsheet programs.</p>',NULL,'handed_over','Web','N','N','N','N','N','N','N/A',97803,'2010-10-27 12:53:44',NULL,NULL);
+INSERT INTO `changelog` VALUES (105,60,'Upgrade to Gene - Variation Table page','<p>The Variation Table page has been redesigned to cope with the large amounts of data it can display.</p>\r\n<p>Initially you will see a summary table of available consequence types, and clicking on the \"Show\" links here will display additional tables with information about the relevant variations.</p>',NULL,'handed_over','Web','N','N','N','N','N','N','N/A',97803,'2010-11-02 16:04:26',NULL,NULL);
+INSERT INTO `changelog` VALUES (106,60,'RNA-Seq data on location views','<p>RNA-seq data supporting the introns for RNA Seq genes can be rendered with the height of the features scaled according to the read coverage (upto a maximum of 50).</p>',NULL,'handed_over','Web','N','N','N','N','N','N','N/A',161,'2010-11-04 15:38:04',NULL,NULL);
+INSERT INTO `changelog` VALUES (107,60,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,23,'2010-11-05 10:46:58');
+INSERT INTO `changelog` VALUES (108,60,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,23,'2010-11-05 10:47:21');
+INSERT INTO `changelog` VALUES (109,60,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,23,'2010-11-05 10:47:57');
+INSERT INTO `changelog` VALUES (110,60,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,23,'2010-11-05 10:48:18');
+INSERT INTO `changelog` VALUES (111,60,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,23,'2010-11-05 10:49:02');
+INSERT INTO `changelog` VALUES (112,60,'New web page - Multi/GeneTree','<p>In order that external sites can link directly to Ensembl on a gene tree stable ID, we have created a new view that does just that. It uses the same image code as the genetree for a specific gene, but with all nodes expanded.</p>\r\n<p>Sample link: http://www.ensembl.org/Multi/GeneTree/Image?gt=ENSGT00590000083062</p>',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',2,'2010-11-05 12:35:40',2,'2010-11-05 12:38:09');
+INSERT INTO `changelog` VALUES (113,60,'Assembly and genebuild information on archive links','<p>On species-specific pages, the \"View in archive site\" panel (accessible from the footer of every page) now shows assembly and genebuild information for each archive, to make it easier to choose the right archive.</p>',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',2,'2010-11-05 12:41:04',NULL,NULL);
+INSERT INTO `changelog` VALUES (114,60,'Structural Variation tab','<p>Structural variations are now displayed in their own <a href=\"http://www.ensembl.org/Homo_sapiens/StructuralVariation/Summary?sv=nsv455827\">tab.</a>Currently this dispays a context iamge and tables of overlapping features. The number of available view for this feature type will be extended in release 61</p>',NULL,'handed_over','Web',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',121,'2010-11-05 13:03:27',NULL,NULL);
+INSERT INTO `changelog` VALUES (115,61,'C.elegans WS220','<p>A new version of the C.elegans database based on the official frozen WS220 WormBase release.</p>','Need to sort out the affy_mapping with Nathan/Dan. ','declared','Wormbase','Y','Y','Y','N','Y','Y','new',NULL,NULL,14179,'2010-11-10 12:20:02');
+INSERT INTO `changelog` VALUES (116,61,'Ensembl Marts for release 61','<p>Full build of all 7 marts for all species.</p>',NULL,'declared','Mart',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',25629,'2010-11-09 16:01:53',NULL,NULL);
+INSERT INTO `changelog` VALUES (117,61,'77 Human ChIP-Seq datasets added','<p>New datasets from ENCODE and the Epigenomics Roadmap were added, which complement existing cell types. A new cell type, K562b was created. 2 sets already in the database, previously associated to K562, were corrected, being now associated to K562b. There is no regulatory build for K562b due the scarcity of data specific for this cell line, which is a variant of K562.</p>','Import post-poned due to concentration on speed of displays and other urgent development','postponed','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',100304,'2010-11-09 16:35:51',1273,'2010-11-10 14:03:01');
+INSERT INTO `changelog` VALUES (119,61,'Human cDNA update','<p>Updated set of cDNA alignments to the human genome.</p>',NULL,'declared','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'new',14183,'2010-11-10 13:51:16',14183,'2010-11-15 15:41:12');
+INSERT INTO `changelog` VALUES (120,61,'seq region synonyms','<p>New table seq_region_synonym added to allow multiple names for sequence regions.</p>',NULL,'declared','Core',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',23,'2010-11-10 13:55:31',NULL,NULL);
+INSERT INTO `changelog` VALUES (121,61,'external database references','<p>Human, mouse and rat will be updated.</p>',NULL,'declared','Core',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',23,'2010-11-10 13:57:26',NULL,NULL);
+INSERT INTO `changelog` VALUES (122,61,'Array Mapping','<p>Array mapping was updated on all species which have had an update to their genome assemblies or gene builds. The probe/set to transcript xrefs were recalculated across all species.</p>',NULL,'declared','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',1273,'2010-11-10 14:05:40',NULL,NULL);
+INSERT INTO `changelog` VALUES (123,61,'Mouse Regulatory Build','<p>The mouse RegulatoryBuild was re-run to re-introduce some data which had been omitted in the previous build.</p>',NULL,'declared','Funcgen',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',1273,'2010-11-10 14:08:24',NULL,NULL);
+INSERT INTO `changelog` VALUES (124,61,'Haplotype correction','<p>Correction of an error that added one extra N to the end of the alternative versions of the chromosomes for five of the haplotypes. The altered alternative chromosomes are: HSCHR6_MHC_MANN, HSCHR6_MHC_MCF, HSCHR6_MHC_SSTO, HSCHR4_1 and HSCHR17_1.</p>','This will be updated in all databases containing the human assembly (core, otherfeatures and cDNA).','declared','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',14183,'2010-11-10 14:20:26',14183,'2010-11-15 15:41:44');
+INSERT INTO `changelog` VALUES (125,61,'Zebrafish Havana merge','<p>A merge of the zebrafish core gene set with Havana manual annotation. The core gene set has been altered to include missing genes that were lost in e60 due to a problem in gene clustering.</p>',NULL,'declared','Genebuild','N','Y','N','Y','Y','N','new',29,'2010-11-11 09:39:37',NULL,NULL);
+INSERT INTO `changelog` VALUES (126,61,'GENCODE gene set update','<pre>GENCODE gene set update (release 6)<br /><br />Update to the Ensembl/Havana GENCODE gene set using the latest Vega gene<br />set</pre>\r\n<p> </p>',NULL,'declared','Genebuild','N','Y','N','N','N','N','new',9335,'2010-11-11 09:43:42',9335,'2010-11-15 15:46:01');
+INSERT INTO `changelog` VALUES (127,61,'GO term and gene name projections','<p>Gene display names and GO terms will be projected from high-coverage species to those with lower coverage.</p>','All species EXCEPT: \r\n\r\nC. elegans\r\nC. intestinalis\r\nC. savignyi\r\nFly\r\nYeast','declared','Core',NULL,NULL,NULL,NULL,NULL,NULL,'patched',36,'2010-11-11 13:21:59',36,'2010-11-15 13:22:25');
+INSERT INTO `changelog` VALUES (130,61,'Ontology database','<p>The Ensembl Ontology database will as usual be populated with the latest available versions of the</p>\r\n<ul>\r\n<li>Gene Ontology (GO)</li>\r\n<li>Sequence Ontology (SO)</li>\r\n</ul>\r\n<p>In addition, we hope to include the Experimental Factor Ontology (EFO)</p>','The EFO ontology will be included if we\'re able to get an OBO file from them in time.','declared','Core',NULL,NULL,NULL,NULL,NULL,NULL,'new',896,'2010-11-11 14:08:28',NULL,NULL);
+INSERT INTO `changelog` VALUES (131,61,'Data','<p>- import dbSNP 132 (human)</p>\r\n<p>- import dbSNP for further species if available in time (mouse, rat, zebrafish, cat, opossum)</p>\r\n<p>- import new release of HGMD database</p>\r\n<p>- corrections to Affymetrix CNV probe data</p>\r\n<p>- import PorcineSNP60 BeadChip</p>\r\n<p>- update of zebrafish variation consequences for new gene build</p>\r\n<p>- variations will now be flagged and retained instead of failed and deleted for species with a new import of dbSNP</p>\r\n<p>- produce GVF file dumps of all variants and their consequence by species</p>',NULL,'declared','Variation',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',96712,'2010-11-11 14:59:04',3,'2010-11-11 15:07:59');
+INSERT INTO `changelog` VALUES (132,61,'Updates to mouse and human Vega annotation','<p>The Vega annotation for both human and mouse has been updated. This matches the annotation presented in Vega release 41.</p>',NULL,'declared','Genebuild','N','Y','N','N','N',NULL,'new',161,'2010-11-11 18:07:21',161,'2010-11-15 12:58:35');
+INSERT INTO `changelog` VALUES (133,61,'new rnaseq database ','<p>I will provide a new databases which consists of the core tables ; the data will data from the human bodymap project ( rnasesq data ). This is a new database which has not been released before. This was originally planned for e60.</p>','I will provide a new databases which consists of the core tables ; the data will data from the human bodymap project ( rnasesq data ). This is a new database which has not been released before. This was originally planned for e60. ','declared','Genebuild','N','N','N','N','N',NULL,'N/A',1011,'2010-11-12 13:37:35',NULL,NULL);
+INSERT INTO `changelog` VALUES (134,61,'mouse cDNA update','<p>mouse cDNA update</p>','mouse cDNA update - performed by Magali or Thibaut','declared','Genebuild','N','N','N','N','N',NULL,'N/A',1011,'2010-11-12 13:42:18',2,'2010-11-16 10:09:30');
+INSERT INTO `changelog` VALUES (135,61,'Families','<p>Updated MCL families including all Ensembl transcript isoforms and newest Uniprot Metazoa.<br /> * Clustering by MCL <br /> * Multiple Sequence Alignments with MAFFT<br /> * Family stable ID mapping</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-12 15:37:40',NULL,NULL);
+INSERT INTO `changelog` VALUES (136,61,'Gene Homologies','<p>GeneTrees with new/updated genebuilds and assemblies<br /> * Updated build of ncRNA trees<br /> * Clustering using hcluster_sg <br /> * Multiple Sequence Alignments using consistency-based MCoffee meta-aligner<br /> * Homology inference including the recent \'possible_ortholog\' type and \'putative gene split\' and <br /> \'contiguous gene split\' exceptions<br /> * Pairwise gene-based dN/dS calculations for high coverage species pairs only<br /> * GeneTree stable ID mapping</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',NULL,NULL,22288,'2010-11-12 15:45:02');
+INSERT INTO `changelog` VALUES (137,61,'Zebrafish Vega annotation','<p>Manual annotation of zebrafish from Havana is now present in Ensembl</p>',NULL,'declared','Genebuild','N','Y','N','N','N',NULL,'new',161,'2010-11-12 17:20:12',161,'2010-11-15 13:07:59');
+INSERT INTO `changelog` VALUES (138,61,'Mouse gene set update','<p>A merge of Ensembl core gene set and Vega manual annotation.</p>\r\n<p>The core gene set has been improved by incorporating new data resources which had become available since the last NCBIM37 genebuild (April 2007), resulting in the correction of existing gene models and the recovery of new mouse genes with human orthologues.</p>\r\n<p>A new otherfeatures database is also available.</p>',NULL,'declared','Genebuild','N','Y','Y','Y','Y',NULL,'new',97238,'2010-11-13 16:21:57',97238,'2010-11-15 16:14:36');
+INSERT INTO `changelog` VALUES (139,61,'New assembly for lizard','<p>A new assembly for lizard</p>',NULL,'declared','Genebuild','Y','Y','Y','N','Y',NULL,'new',97245,'2010-11-15 09:07:00',97245,'2010-11-15 09:07:38');
+INSERT INTO `changelog` VALUES (140,61,'Turkey','<p>The first genebuild for turkey</p>',NULL,'declared','Genebuild','Y','Y','Y','N','Y',NULL,'new',97245,'2010-11-15 09:43:22',NULL,NULL);
+INSERT INTO `changelog` VALUES (141,61,'New Canonical Transcript definition','<p>For previous releases, the canonical transcript of a gene has been set to the transcript with the longest translation (for coding genes) or to the transcript with the longest mRNA (for noncoding genes). From release 61, the canonical transcript for human and mouse will now be set to the longest CCDS transcript. Where no CCDS transcript exists for the gene, the longest Ensembl-HAVANA merge transcript will be used.</p>',NULL,'declared','Genebuild','N','Y','N','N','N',NULL,'N/A',5132,'2010-11-15 09:58:12',NULL,NULL);
+INSERT INTO `changelog` VALUES (142,61,'Pairwise Alignments','<p>Human - Lizard tBlat - net</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',NULL,NULL,22288,'2010-11-15 11:45:14');
+INSERT INTO `changelog` VALUES (143,61,'Pairwise Alignments','<p>Human - Turkey tBlat net</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 11:51:11',22288,'2010-11-15 13:18:40');
+INSERT INTO `changelog` VALUES (144,61,'Pairwise Alignments','<p>Turkey - Chicken Lastz</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 11:52:04',22288,'2010-11-15 13:20:16');
+INSERT INTO `changelog` VALUES (145,61,'Pairwise Alignments','<p>Lizard - Chicken Lastz</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 11:53:04',NULL,NULL);
+INSERT INTO `changelog` VALUES (146,61,'Pairwise Alignments','<p>Dog - Horse Lastz</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 11:53:47',NULL,NULL);
+INSERT INTO `changelog` VALUES (147,61,'Pairwise Alignments','<p>**Removing chicken - zebrafinch tBlat</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 11:55:43',22288,'2010-11-15 13:21:39');
+INSERT INTO `changelog` VALUES (148,61,'Multiple alignments','<p>Chicken - Turkey -Zebrafinch EPO multiple alignment</p>',NULL,'declared','Compara','N','N','N','N','N',NULL,'N/A',22288,'2010-11-15 12:30:36',NULL,NULL);
+INSERT INTO `changelog` VALUES (150,61,'Removal of ambiguous bases from human DNA sequence','<p>Ambiguous bases have been replaced with \'N\' for the following two human contigs:</p>\r\n<ul>\r\n<li>contig::AF152363.1:1:185763:1. This contig held 28 ambiguous bases: S(4), W(6), M(5), K(4), R(5), Y(4).</li>\r\n<li>contig::AF152364.1:1:170452:1. This contig held 4 ambiguous bases: S(1), W(1), Y(1), K(1).</li>\r\n</ul>',NULL,'handed_over','Genebuild',NULL,NULL,NULL,NULL,NULL,NULL,'N/A',5132,'2010-11-15 13:39:50',NULL,NULL);
+
+--
+-- Table structure for table `changelog_species`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `changelog_species` (
+ `changelog_id` int(11) NOT NULL DEFAULT '0',
+ `species_id` int(11) NOT NULL DEFAULT '0',
+ PRIMARY KEY (`changelog_id`,`species_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `changelog_species`
+--
+-- ORDER BY: `changelog_id`,`species_id`
+
+INSERT INTO `changelog_species` VALUES (93,1);
+INSERT INTO `changelog_species` VALUES (93,11);
+INSERT INTO `changelog_species` VALUES (93,18);
+INSERT INTO `changelog_species` VALUES (93,21);
+INSERT INTO `changelog_species` VALUES (93,27);
+INSERT INTO `changelog_species` VALUES (93,30);
+INSERT INTO `changelog_species` VALUES (93,43);
+INSERT INTO `changelog_species` VALUES (114,5);
+INSERT INTO `changelog_species` VALUES (114,21);
+INSERT INTO `changelog_species` VALUES (114,27);
+INSERT INTO `changelog_species` VALUES (114,42);
+INSERT INTO `changelog_species` VALUES (119,21);
+INSERT INTO `changelog_species` VALUES (124,21);
+INSERT INTO `changelog_species` VALUES (126,21);
+INSERT INTO `changelog_species` VALUES (132,21);
+INSERT INTO `changelog_species` VALUES (132,27);
+INSERT INTO `changelog_species` VALUES (138,27);
+INSERT INTO `changelog_species` VALUES (141,21);
+INSERT INTO `changelog_species` VALUES (141,27);
+INSERT INTO `changelog_species` VALUES (142,1);
+INSERT INTO `changelog_species` VALUES (142,21);
+INSERT INTO `changelog_species` VALUES (143,21);
+INSERT INTO `changelog_species` VALUES (143,52);
+INSERT INTO `changelog_species` VALUES (144,18);
+INSERT INTO `changelog_species` VALUES (144,52);
+INSERT INTO `changelog_species` VALUES (145,1);
+INSERT INTO `changelog_species` VALUES (145,18);
+INSERT INTO `changelog_species` VALUES (146,5);
+INSERT INTO `changelog_species` VALUES (146,15);
+INSERT INTO `changelog_species` VALUES (147,18);
+INSERT INTO `changelog_species` VALUES (147,43);
+INSERT INTO `changelog_species` VALUES (149,52);
+INSERT INTO `changelog_species` VALUES (151,21);
+INSERT INTO `changelog_species` VALUES (152,1);
+INSERT INTO `changelog_species` VALUES (153,49);
+INSERT INTO `changelog_species` VALUES (154,5);
+INSERT INTO `changelog_species` VALUES (155,50);
+
+--
+-- Table structure for table `db`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `db` (
+ `db_id` int(10) unsigned NOT NULL,
+ `species_id` int(10) unsigned NOT NULL,
+ `db_type` enum('cdna','core','coreexpressionatlas','coreexpressionest','coreexpressiongnf','funcgen','otherfeatures','variation','vega') NOT NULL DEFAULT 'core',
+ `db_release` int(11) NOT NULL,
+ `db_assembly` varchar(8) NOT NULL,
+ `db_suffix` char(1) DEFAULT '',
+ `db_host` varchar(32) DEFAULT NULL,
+ PRIMARY KEY (`db_id`),
+ UNIQUE KEY `species_release_idx` (`species_id`,`db_type`,`db_release`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `db`
+--
+-- ORDER BY: `db_id`
+
+INSERT INTO `db` VALUES (1,21,'coreexpressionest',59,'37','d','ens-staging2');
+INSERT INTO `db` VALUES (2,21,'coreexpressiongnf',59,'37','d','ens-staging2');
+INSERT INTO `db` VALUES (3,21,'variation',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (4,50,'otherfeatures',60,'41','q','ens-staging2');
+INSERT INTO `db` VALUES (5,13,'variation',60,'525','b','ens-staging1');
+INSERT INTO `db` VALUES (6,29,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (7,24,'core',60,'1','c','ens-staging1');
+INSERT INTO `db` VALUES (8,37,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (9,21,'core',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (10,5,'core',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (11,33,'core',60,'1','h','ens-staging2');
+INSERT INTO `db` VALUES (12,2,'funcgen',60,'4','i','ens-staging1');
+INSERT INTO `db` VALUES (13,42,'funcgen',60,'9','d','ens-staging2');
+INSERT INTO `db` VALUES (14,47,'core',60,'1','i','ens-staging2');
+INSERT INTO `db` VALUES (15,4,'otherfeatures',60,'321','b','ens-staging1');
+INSERT INTO `db` VALUES (16,43,'otherfeatures',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (17,44,'core',60,'4','n','ens-staging2');
+INSERT INTO `db` VALUES (18,46,'core',60,'8','e','ens-staging2');
+INSERT INTO `db` VALUES (19,21,'cdna',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (20,22,'core',60,'3','c','ens-staging1');
+INSERT INTO `db` VALUES (21,40,'core',60,'1','h','ens-staging2');
+INSERT INTO `db` VALUES (22,32,'core',60,'1','l','ens-staging2');
+INSERT INTO `db` VALUES (23,38,'core',60,'34','b','ens-staging2');
+INSERT INTO `db` VALUES (24,2,'core',60,'4','i','ens-staging1');
+INSERT INTO `db` VALUES (25,30,'otherfeatures',60,'1','n','ens-staging2');
+INSERT INTO `db` VALUES (26,4,'core',60,'321','b','ens-staging1');
+INSERT INTO `db` VALUES (27,9,'core',60,'2','k','ens-staging1');
+INSERT INTO `db` VALUES (28,32,'otherfeatures',60,'1','l','ens-staging2');
+INSERT INTO `db` VALUES (29,21,'coreexpressionest',60,'37','e','ens-staging2');
+INSERT INTO `db` VALUES (30,7,'core',60,'1','d','ens-staging1');
+INSERT INTO `db` VALUES (31,25,'core',60,'1','e','ens-staging2');
+INSERT INTO `db` VALUES (32,45,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (33,27,'vega',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (34,5,'otherfeatures',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (35,15,'variation',60,'2','g','ens-staging1');
+INSERT INTO `db` VALUES (36,3,'funcgen',60,'210','b','ens-staging1');
+INSERT INTO `db` VALUES (37,34,'core',60,'21','o','ens-staging2');
+INSERT INTO `db` VALUES (38,21,'vega',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (39,18,'variation',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (40,50,'funcgen',60,'41','q','ens-staging2');
+INSERT INTO `db` VALUES (41,10,'core',60,'9','','ens-staging1');
+INSERT INTO `db` VALUES (42,11,'core',60,'2','d','ens-staging1');
+INSERT INTO `db` VALUES (43,9,'otherfeatures',60,'2','k','ens-staging1');
+INSERT INTO `db` VALUES (44,42,'variation',60,'9','d','ens-staging2');
+INSERT INTO `db` VALUES (45,19,'core',60,'1','m','ens-staging1');
+INSERT INTO `db` VALUES (46,39,'core',60,'2','b','ens-staging1');
+INSERT INTO `db` VALUES (47,43,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (48,13,'core',60,'525','b','ens-staging1');
+INSERT INTO `db` VALUES (49,50,'core',60,'41','q','ens-staging2');
+INSERT INTO `db` VALUES (50,21,'coreexpressionatlas',60,'37','e','ens-staging2');
+INSERT INTO `db` VALUES (51,8,'funcgen',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (52,27,'variation',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (53,39,'funcgen',60,'2','b','ens-staging1');
+INSERT INTO `db` VALUES (54,49,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (55,51,'core',60,'1','','ens-staging1');
+INSERT INTO `db` VALUES (56,36,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (57,5,'funcgen',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (58,42,'core',60,'9','d','ens-staging2');
+INSERT INTO `db` VALUES (59,43,'variation',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (60,21,'funcgen',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (61,2,'otherfeatures',60,'4','i','ens-staging1');
+INSERT INTO `db` VALUES (62,20,'core',60,'3','c','ens-staging1');
+INSERT INTO `db` VALUES (63,20,'otherfeatures',60,'3','c','ens-staging1');
+INSERT INTO `db` VALUES (64,21,'otherfeatures',60,'37','e','ens-staging1');
+INSERT INTO `db` VALUES (65,23,'otherfeatures',60,'10','o','ens-staging1');
+INSERT INTO `db` VALUES (66,35,'variation',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (67,38,'otherfeatures',60,'34','b','ens-staging2');
+INSERT INTO `db` VALUES (68,30,'funcgen',60,'1','n','ens-staging2');
+INSERT INTO `db` VALUES (69,27,'core',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (70,18,'funcgen',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (71,10,'funcgen',60,'9','','ens-staging1');
+INSERT INTO `db` VALUES (72,31,'core',60,'3','','ens-staging2');
+INSERT INTO `db` VALUES (73,46,'variation',60,'8','e','ens-staging2');
+INSERT INTO `db` VALUES (74,3,'core',60,'210','b','ens-staging1');
+INSERT INTO `db` VALUES (75,39,'variation',60,'2','b','ens-staging1');
+INSERT INTO `db` VALUES (76,10,'coreexpressionest',60,'9','','ens-staging1');
+INSERT INTO `db` VALUES (77,34,'variation',60,'21','o','ens-staging2');
+INSERT INTO `db` VALUES (78,15,'otherfeatures',60,'2','g','ens-staging1');
+INSERT INTO `db` VALUES (79,19,'otherfeatures',60,'1','m','ens-staging1');
+INSERT INTO `db` VALUES (80,16,'core',60,'1','h','ens-staging1');
+INSERT INTO `db` VALUES (81,46,'otherfeatures',60,'8','e','ens-staging2');
+INSERT INTO `db` VALUES (82,1,'core',60,'1','d','ens-staging1');
+INSERT INTO `db` VALUES (83,35,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (84,23,'core',60,'10','o','ens-staging1');
+INSERT INTO `db` VALUES (85,48,'core',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (86,17,'core',60,'1','i','ens-staging1');
+INSERT INTO `db` VALUES (87,28,'core',60,'1','j','ens-staging2');
+INSERT INTO `db` VALUES (88,18,'otherfeatures',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (89,42,'otherfeatures',60,'9','d','ens-staging2');
+INSERT INTO `db` VALUES (90,15,'core',60,'2','g','ens-staging1');
+INSERT INTO `db` VALUES (91,44,'otherfeatures',60,'4','n','ens-staging2');
+INSERT INTO `db` VALUES (92,35,'otherfeatures',60,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (93,31,'otherfeatures',60,'3','','ens-staging2');
+INSERT INTO `db` VALUES (94,13,'otherfeatures',60,'525','b','ens-staging1');
+INSERT INTO `db` VALUES (95,30,'variation',60,'1','n','ens-staging2');
+INSERT INTO `db` VALUES (96,5,'variation',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (97,30,'core',60,'1','n','ens-staging2');
+INSERT INTO `db` VALUES (98,10,'otherfeatures',60,'9','','ens-staging1');
+INSERT INTO `db` VALUES (99,38,'variation',60,'34','b','ens-staging2');
+INSERT INTO `db` VALUES (100,6,'core',60,'3','d','ens-staging1');
+INSERT INTO `db` VALUES (101,2,'variation',60,'4','i','ens-staging1');
+INSERT INTO `db` VALUES (102,8,'core',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (103,13,'funcgen',60,'525','b','ens-staging1');
+INSERT INTO `db` VALUES (104,12,'core',60,'1','f','ens-staging1');
+INSERT INTO `db` VALUES (105,8,'otherfeatures',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (106,26,'core',60,'5l','','ens-staging2');
+INSERT INTO `db` VALUES (107,34,'otherfeatures',60,'21','o','ens-staging2');
+INSERT INTO `db` VALUES (108,38,'funcgen',60,'34','b','ens-staging2');
+INSERT INTO `db` VALUES (109,6,'otherfeatures',60,'3','d','ens-staging1');
+INSERT INTO `db` VALUES (110,34,'funcgen',60,'21','o','ens-staging2');
+INSERT INTO `db` VALUES (111,18,'core',60,'2','p','ens-staging1');
+INSERT INTO `db` VALUES (112,27,'funcgen',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (113,14,'core',60,'1','j','ens-staging1');
+INSERT INTO `db` VALUES (114,41,'core',60,'1','j','ens-staging2');
+INSERT INTO `db` VALUES (115,23,'funcgen',60,'10','o','ens-staging1');
+INSERT INTO `db` VALUES (116,51,'otherfeatures',60,'1','','ens-staging1');
+INSERT INTO `db` VALUES (117,27,'otherfeatures',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (118,27,'cdna',60,'37','m','ens-staging2');
+INSERT INTO `db` VALUES (119,39,'otherfeatures',60,'2','b','ens-staging1');
+INSERT INTO `db` VALUES (120,1,'otherfeatures',60,'1','d','ens-staging1');
+INSERT INTO `db` VALUES (121,10,'variation',60,'9','','ens-staging1');
+INSERT INTO `db` VALUES (122,4,'otherfeatures',61,'321','c','ens-staging1');
+INSERT INTO `db` VALUES (123,18,'funcgen',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (124,39,'funcgen',61,'2','c','ens-staging1');
+INSERT INTO `db` VALUES (125,27,'variation',61,'37','n','ens-staging2');
+INSERT INTO `db` VALUES (126,23,'otherfeatures',61,'10','p','ens-staging1');
+INSERT INTO `db` VALUES (127,8,'otherfeatures',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (128,2,'variation',61,'4','j','ens-staging1');
+INSERT INTO `db` VALUES (129,50,'core',61,'41','r','ens-staging2');
+INSERT INTO `db` VALUES (130,38,'funcgen',61,'34','c','ens-staging2');
+INSERT INTO `db` VALUES (131,18,'variation',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (132,15,'core',61,'2','h','ens-staging1');
+INSERT INTO `db` VALUES (133,44,'otherfeatures',61,'4','o','ens-staging2');
+INSERT INTO `db` VALUES (134,32,'core',61,'1','m','ens-staging2');
+INSERT INTO `db` VALUES (135,36,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (136,13,'variation',61,'525','c','ens-staging1');
+INSERT INTO `db` VALUES (137,45,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (138,31,'core',61,'3','a','ens-staging2');
+INSERT INTO `db` VALUES (139,34,'core',61,'21','p','ens-staging2');
+INSERT INTO `db` VALUES (140,30,'variation',61,'1','o','ens-staging2');
+INSERT INTO `db` VALUES (141,10,'funcgen',61,'9','a','ens-staging1');
+INSERT INTO `db` VALUES (142,25,'core',61,'1','f','ens-staging2');
+INSERT INTO `db` VALUES (143,21,'variation',61,'37','f','ens-staging1');
+INSERT INTO `db` VALUES (144,10,'variation',61,'9','a','ens-staging1');
+INSERT INTO `db` VALUES (145,28,'core',61,'1','k','ens-staging2');
+INSERT INTO `db` VALUES (146,10,'otherfeatures',61,'9','a','ens-staging1');
+INSERT INTO `db` VALUES (147,43,'otherfeatures',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (148,30,'otherfeatures',61,'1','o','ens-staging2');
+INSERT INTO `db` VALUES (149,5,'variation',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (150,30,'funcgen',61,'1','o','ens-staging2');
+INSERT INTO `db` VALUES (151,5,'otherfeatures',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (152,19,'otherfeatures',61,'1','n','ens-staging1');
+INSERT INTO `db` VALUES (153,46,'core',61,'8','f','ens-staging2');
+INSERT INTO `db` VALUES (154,51,'otherfeatures',61,'1','a','ens-staging1');
+INSERT INTO `db` VALUES (155,13,'funcgen',61,'525','c','ens-staging1');
+INSERT INTO `db` VALUES (156,50,'otherfeatures',61,'41','r','ens-staging2');
+INSERT INTO `db` VALUES (157,50,'funcgen',61,'41','r','ens-staging2');
+INSERT INTO `db` VALUES (158,34,'otherfeatures',61,'21','p','ens-staging2');
+INSERT INTO `db` VALUES (159,6,'otherfeatures',61,'3','e','ens-staging1');
+INSERT INTO `db` VALUES (160,18,'core',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (161,22,'core',61,'3','d','ens-staging1');
+INSERT INTO `db` VALUES (162,26,'core',61,'5l','a','ens-staging2');
+INSERT INTO `db` VALUES (163,4,'core',61,'321','c','ens-staging1');
+INSERT INTO `db` VALUES (164,9,'otherfeatures',61,'2','l','ens-staging1');
+INSERT INTO `db` VALUES (165,7,'core',61,'1','e','ens-staging1');
+INSERT INTO `db` VALUES (166,49,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (167,16,'core',61,'1','i','ens-staging1');
+INSERT INTO `db` VALUES (168,6,'core',61,'3','e','ens-staging1');
+INSERT INTO `db` VALUES (169,30,'core',61,'1','o','ens-staging2');
+INSERT INTO `db` VALUES (170,27,'funcgen',61,'37','n','ens-staging2');
+INSERT INTO `db` VALUES (171,44,'core',61,'4','o','ens-staging2');
+INSERT INTO `db` VALUES (172,47,'core',61,'1','j','ens-staging2');
+INSERT INTO `db` VALUES (173,11,'core',61,'2','e','ens-staging1');
+INSERT INTO `db` VALUES (174,8,'core',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (175,5,'funcgen',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (176,5,'core',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (177,12,'core',61,'1','g','ens-staging1');
+INSERT INTO `db` VALUES (178,2,'funcgen',61,'4','j','ens-staging1');
+INSERT INTO `db` VALUES (179,48,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (180,42,'variation',61,'9','e','ens-staging2');
+INSERT INTO `db` VALUES (181,42,'funcgen',61,'9','e','ens-staging2');
+INSERT INTO `db` VALUES (182,35,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (183,43,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (184,38,'core',61,'34','c','ens-staging2');
+INSERT INTO `db` VALUES (185,41,'core',61,'1','k','ens-staging2');
+INSERT INTO `db` VALUES (186,9,'core',61,'2','l','ens-staging1');
+INSERT INTO `db` VALUES (187,38,'otherfeatures',61,'34','c','ens-staging2');
+INSERT INTO `db` VALUES (188,42,'core',61,'9','e','ens-staging2');
+INSERT INTO `db` VALUES (189,38,'variation',61,'34','c','ens-staging2');
+INSERT INTO `db` VALUES (190,15,'variation',61,'2','h','ens-staging1');
+INSERT INTO `db` VALUES (191,33,'core',61,'1','i','ens-staging2');
+INSERT INTO `db` VALUES (192,37,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (193,43,'variation',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (194,14,'core',61,'1','k','ens-staging1');
+INSERT INTO `db` VALUES (195,51,'core',61,'1','a','ens-staging1');
+INSERT INTO `db` VALUES (196,19,'core',61,'1','n','ens-staging1');
+INSERT INTO `db` VALUES (197,29,'core',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (198,34,'funcgen',61,'21','p','ens-staging2');
+INSERT INTO `db` VALUES (199,8,'funcgen',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (200,20,'core',61,'3','d','ens-staging1');
+INSERT INTO `db` VALUES (201,46,'otherfeatures',61,'8','f','ens-staging2');
+INSERT INTO `db` VALUES (202,18,'otherfeatures',61,'2','q','ens-staging1');
+INSERT INTO `db` VALUES (203,24,'core',61,'1','d','ens-staging1');
+INSERT INTO `db` VALUES (204,2,'core',61,'4','j','ens-staging1');
+INSERT INTO `db` VALUES (205,35,'otherfeatures',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (206,13,'otherfeatures',61,'525','c','ens-staging1');
+INSERT INTO `db` VALUES (207,39,'core',61,'2','c','ens-staging1');
+INSERT INTO `db` VALUES (208,40,'core',61,'1','i','ens-staging2');
+INSERT INTO `db` VALUES (209,46,'variation',61,'8','f','ens-staging2');
+INSERT INTO `db` VALUES (210,23,'funcgen',61,'10','p','ens-staging1');
+INSERT INTO `db` VALUES (211,27,'otherfeatures',61,'37','n','ens-staging2');
+INSERT INTO `db` VALUES (212,2,'otherfeatures',61,'4','j','ens-staging1');
+INSERT INTO `db` VALUES (213,42,'otherfeatures',61,'9','e','ens-staging2');
+INSERT INTO `db` VALUES (214,23,'core',61,'10','p','ens-staging1');
+INSERT INTO `db` VALUES (215,20,'otherfeatures',61,'3','d','ens-staging1');
+INSERT INTO `db` VALUES (216,21,'funcgen',61,'37','f','ens-staging1');
+INSERT INTO `db` VALUES (217,39,'variation',61,'2','c','ens-staging1');
+INSERT INTO `db` VALUES (218,17,'core',61,'1','j','ens-staging1');
+INSERT INTO `db` VALUES (219,15,'otherfeatures',61,'2','h','ens-staging1');
+INSERT INTO `db` VALUES (220,31,'otherfeatures',61,'3','a','ens-staging2');
+INSERT INTO `db` VALUES (221,35,'variation',61,'1','g','ens-staging2');
+INSERT INTO `db` VALUES (222,32,'otherfeatures',61,'1','m','ens-staging2');
+INSERT INTO `db` VALUES (223,34,'variation',61,'21','p','ens-staging2');
+INSERT INTO `db` VALUES (224,13,'core',61,'525','c','ens-staging1');
+INSERT INTO `db` VALUES (225,39,'otherfeatures',61,'2','c','ens-staging1');
+
+--
+-- Table structure for table `master_attrib_type`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `master_attrib_type` (
+ `attrib_type_id` smallint(5) unsigned NOT NULL,
+ `code` varchar(15) NOT NULL DEFAULT '',
+ `name` varchar(255) NOT NULL DEFAULT '',
+ `description` text,
+ PRIMARY KEY (`attrib_type_id`),
+ UNIQUE KEY `code_idx` (`code`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `master_attrib_type`
+--
+-- ORDER BY: `attrib_type_id`
+
+INSERT INTO `master_attrib_type` VALUES (1,'embl_acc','European Nucleotide Archive (was EMBL) accession',NULL);
+INSERT INTO `master_attrib_type` VALUES (2,'status','Status',NULL);
+INSERT INTO `master_attrib_type` VALUES (3,'synonym','Synonym',NULL);
+INSERT INTO `master_attrib_type` VALUES (4,'name','Name','Alternative/long name');
+INSERT INTO `master_attrib_type` VALUES (5,'type','Type of feature',NULL);
+INSERT INTO `master_attrib_type` VALUES (6,'toplevel','Top Level','Top Level Non-Redundant Sequence Region');
+INSERT INTO `master_attrib_type` VALUES (7,'GeneCount','Gene Count','Total Number of Genes');
+INSERT INTO `master_attrib_type` VALUES (8,'KnownGeneCount','Known Gene Count','Total Number of Known Genes');
+INSERT INTO `master_attrib_type` VALUES (9,'PseudoGeneCount','PseudoGene Count','Total Number of PseudoGenes');
+INSERT INTO `master_attrib_type` VALUES (10,'SNPCount','SNP Count','Total Number of SNPs');
+INSERT INTO `master_attrib_type` VALUES (11,'codon_table','Codon Table','Alternate codon table');
+INSERT INTO `master_attrib_type` VALUES (12,'_selenocysteine','Selenocysteine',NULL);
+INSERT INTO `master_attrib_type` VALUES (13,'bacend','bacend',NULL);
+INSERT INTO `master_attrib_type` VALUES (14,'htg','htg','High Throughput phase attribute');
+INSERT INTO `master_attrib_type` VALUES (15,'miRNA','Micro RNA','Coordinates of the mature miRNA');
+INSERT INTO `master_attrib_type` VALUES (16,'non_ref','Non Reference','Non Reference Sequence Region');
+INSERT INTO `master_attrib_type` VALUES (17,'sanger_project','Sanger Project name',NULL);
+INSERT INTO `master_attrib_type` VALUES (18,'clone_name','Clone name',NULL);
+INSERT INTO `master_attrib_type` VALUES (19,'fish','FISH location',NULL);
+INSERT INTO `master_attrib_type` VALUES (21,'org','Sequencing centre',NULL);
+INSERT INTO `master_attrib_type` VALUES (22,'method','Method',NULL);
+INSERT INTO `master_attrib_type` VALUES (23,'superctg','Super contig id',NULL);
+INSERT INTO `master_attrib_type` VALUES (24,'inner_start','Max start value',NULL);
+INSERT INTO `master_attrib_type` VALUES (25,'inner_end','Min end value',NULL);
+INSERT INTO `master_attrib_type` VALUES (26,'state','Current state of clone',NULL);
+INSERT INTO `master_attrib_type` VALUES (27,'organisation','Organisation sequencing clone',NULL);
+INSERT INTO `master_attrib_type` VALUES (28,'seq_len','Accession length',NULL);
+INSERT INTO `master_attrib_type` VALUES (29,'fp_size','FP size',NULL);
+INSERT INTO `master_attrib_type` VALUES (30,'BACend_flag','BAC end flags',NULL);
+INSERT INTO `master_attrib_type` VALUES (31,'fpc_clone_id','fpc clone',NULL);
+INSERT INTO `master_attrib_type` VALUES (32,'KnwnPCCount','protein_coding_KNOWN','Number of Known Protein Coding');
+INSERT INTO `master_attrib_type` VALUES (33,'NovPCCount','protein_coding_NOVEL','Number of Novel Protein Coding');
+INSERT INTO `master_attrib_type` VALUES (34,'NovPTCount','processed_transcript_NOVEL','Number of Novel Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (35,'PutPTCount','processed_transcript_PUTATIVE','Number of Putative Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (36,'PredPCCount','protein_coding_PREDICTED','Number of Predicted Protein Coding');
+INSERT INTO `master_attrib_type` VALUES (37,'IGGeneCount','IG_gene','Number of IG Genes');
+INSERT INTO `master_attrib_type` VALUES (38,'IGPsGenCount','IG_pseudogene','Number of IG Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (39,'TotPsCount','total_pseudogene','Total Number of Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (42,'KnwnPCProgCount','protein_coding_in_progress_KNOWN','Number of Known Protein Coding in progress');
+INSERT INTO `master_attrib_type` VALUES (43,'NovPCProgCount','protein_coding_in_progress_NOVEL','Number of Novel Protein Coding in progress');
+INSERT INTO `master_attrib_type` VALUES (44,'AnnotSeqLength','Annotated sequence length','Annotated Sequence');
+INSERT INTO `master_attrib_type` VALUES (45,'TotCloneNum','Total number of clones','Total Number of Clones');
+INSERT INTO `master_attrib_type` VALUES (46,'NumAnnotClone','Fully annotated clones','Number of Fully Annotated Clones');
+INSERT INTO `master_attrib_type` VALUES (47,'ack','Acknowledgement','Acknowledgement for manual annotation');
+INSERT INTO `master_attrib_type` VALUES (48,'htg_phase','High throughput phase','High throughput genomic sequencing phase');
+INSERT INTO `master_attrib_type` VALUES (49,'description','Description','A general descriptive text attribute');
+INSERT INTO `master_attrib_type` VALUES (50,'chromosome','Chromosome','Chromosomal location for supercontigs that are not assembled');
+INSERT INTO `master_attrib_type` VALUES (51,'nonsense','Nonsense Mutation','Strain specific nonesense mutation');
+INSERT INTO `master_attrib_type` VALUES (52,'author','Author','Group resonsible for Vega annotation');
+INSERT INTO `master_attrib_type` VALUES (53,'author_email','Author email address','Author email address');
+INSERT INTO `master_attrib_type` VALUES (54,'remark','Remark','Annotation remark');
+INSERT INTO `master_attrib_type` VALUES (55,'transcr_class','Transcript class','Transcript class');
+INSERT INTO `master_attrib_type` VALUES (56,'KnwnPTCount','processed_transcript_KNOWN','Number of Known Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (57,'ccds','CCDS','CCDS identifier');
+INSERT INTO `master_attrib_type` VALUES (58,'CCDS_PublicNote','CCDS Public Note','Public Note for CCDS identifier, provided by http://www.ncbi.nlm.nih.gov/CCDS');
+INSERT INTO `master_attrib_type` VALUES (59,'Frameshift','Frameshift','Frameshift modelled as intron');
+INSERT INTO `master_attrib_type` VALUES (60,'PTCount','processed_transcript','Number of Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (61,'PredPTCount','processed_transcript_PREDICTED','Number of Predicted Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (62,'ncRNA','Structure','RNA secondary structure line');
+INSERT INTO `master_attrib_type` VALUES (63,'skip_clone','skip clone Skip clone in align_by_clone_identity.pl',NULL);
+INSERT INTO `master_attrib_type` VALUES (64,'GeneNo_knwCod','known protein_coding Gene Count','Number of known protein_coding Genes');
+INSERT INTO `master_attrib_type` VALUES (65,'GeneNo_novCod','novel protein_coding Gene Count','Number of novel protein_coding Genes');
+INSERT INTO `master_attrib_type` VALUES (66,'GeneNo_rRNA','rRNA Gene Count','Number of rRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (67,'GeneNo_pseudo','pseudogene Gene Count','Number of pseudogene Genes');
+INSERT INTO `master_attrib_type` VALUES (68,'GeneNo_snRNA','snRNA Gene Count','Number of snRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (69,'GeneNo_snoRNA','snoRNA Gene Count','Number of snoRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (70,'GeneNo_miRNA','miRNA Gene Count','Number of miRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (71,'GeneNo_mscRNA','misc_RNA Gene Count','Number of misc_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (72,'GeneNo_scRNA','scRNA Gene Count','Number of scRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (73,'GeneNo_MTrRNA','Mt_rRNA Gene Count','Number of Mt_rRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (74,'GeneNo_MTtRNA','Mt_tRNA Gene Count','Number of Mt_tRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (75,'GeneNo_RNA_pseu','scRNA_pseudogene Gene Count','Number of scRNA_pseudogene Genes');
+INSERT INTO `master_attrib_type` VALUES (76,'GeneNo_tRNA','tRNA Gene Count',' Number of tRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (77,'GeneNo_rettran','retrotransposed Gene Count','Number of retrotransposed Genes');
+INSERT INTO `master_attrib_type` VALUES (78,'GeneNo_snlRNA','snlRNA Gene Count','Number of snlRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (79,'GeneNo_proc_tr','processed_transcript Gene Count','Number of processed transcript Genes');
+INSERT INTO `master_attrib_type` VALUES (80,'supercontig','SuperContig name',NULL);
+INSERT INTO `master_attrib_type` VALUES (81,'well_name','Well plate name',NULL);
+INSERT INTO `master_attrib_type` VALUES (82,'bacterial','Bacterial',NULL);
+INSERT INTO `master_attrib_type` VALUES (83,'NovelCDSCount','Novel CDS Count',NULL);
+INSERT INTO `master_attrib_type` VALUES (84,'NovelTransCount','Novel Transcript Count',NULL);
+INSERT INTO `master_attrib_type` VALUES (85,'PutTransCount','Putative Transcript Count',NULL);
+INSERT INTO `master_attrib_type` VALUES (86,'PredTransCount','Predicted Transcript Count',NULL);
+INSERT INTO `master_attrib_type` VALUES (87,'UnclassPsCount','Unclass Ps count',NULL);
+INSERT INTO `master_attrib_type` VALUES (88,'KnwnprogCount','Known prog Count',NULL);
+INSERT INTO `master_attrib_type` VALUES (89,'NovCDSprogCount','Novel CDS prog count',NULL);
+INSERT INTO `master_attrib_type` VALUES (90,'bacend_well_nam','BACend well name',NULL);
+INSERT INTO `master_attrib_type` VALUES (91,'alt_well_name','Alt well name',NULL);
+INSERT INTO `master_attrib_type` VALUES (92,'TranscriptEdge','Transcript Edge',NULL);
+INSERT INTO `master_attrib_type` VALUES (93,'alt_embl_acc','Alt European Nucleotide Archive (was EMBL) acc',NULL);
+INSERT INTO `master_attrib_type` VALUES (94,'alt_org','Alt org',NULL);
+INSERT INTO `master_attrib_type` VALUES (95,'intl_clone_name','International Clone Name',NULL);
+INSERT INTO `master_attrib_type` VALUES (96,'embl_version','European Nucleotide Archive (was EMBL) Version',NULL);
+INSERT INTO `master_attrib_type` VALUES (97,'chr','Chromosome Name','Chromosome Name Contained in the Assembly');
+INSERT INTO `master_attrib_type` VALUES (98,'equiv_asm','Equivalent EnsEMBL assembly','For full chromosomes made from NCBI AGPs');
+INSERT INTO `master_attrib_type` VALUES (99,'GeneNo_ncRNA','ncRNA Gene Count','Number of ncRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (100,'GeneNo_Ig','Ig Gene Count','Number of Ig Genes');
+INSERT INTO `master_attrib_type` VALUES (109,'HitSimilarity','hit similarity','percentage id to parent transcripts');
+INSERT INTO `master_attrib_type` VALUES (110,'HitCoverage','hit coverage','coverage of parent transcripts');
+INSERT INTO `master_attrib_type` VALUES (111,'PropNonGap','proportion non gap','proportion non gap');
+INSERT INTO `master_attrib_type` VALUES (112,'NumStops','number of stops',NULL);
+INSERT INTO `master_attrib_type` VALUES (113,'GapExons','gap exons','number of gap exons');
+INSERT INTO `master_attrib_type` VALUES (114,'SourceTran','source transcript','source transcript');
+INSERT INTO `master_attrib_type` VALUES (115,'EndNotFound','end not found','end not found');
+INSERT INTO `master_attrib_type` VALUES (116,'StartNotFound','start not found','start not found');
+INSERT INTO `master_attrib_type` VALUES (117,'Frameshift Fra','Frameshift modelled as intron',NULL);
+INSERT INTO `master_attrib_type` VALUES (118,'ensembl_name','Ensembl name','Name of equivalent Ensembl chromosome');
+INSERT INTO `master_attrib_type` VALUES (119,'NoAnnotation','NoAnnotation','Clones without manual annotation');
+INSERT INTO `master_attrib_type` VALUES (120,'hap_contig','Haplotype contig','Contig present on a haplotype');
+INSERT INTO `master_attrib_type` VALUES (121,'annotated','Clone Annotation Status',NULL);
+INSERT INTO `master_attrib_type` VALUES (122,'keyword','Clone Keyword',NULL);
+INSERT INTO `master_attrib_type` VALUES (123,'hidden_remark','Hidden Remark',NULL);
+INSERT INTO `master_attrib_type` VALUES (124,'mRNA_start_NF','mRNA start not found',NULL);
+INSERT INTO `master_attrib_type` VALUES (125,'mRNA_end_NF','mRNA end not found',NULL);
+INSERT INTO `master_attrib_type` VALUES (126,'cds_start_NF','CDS start not found',NULL);
+INSERT INTO `master_attrib_type` VALUES (127,'cds_end_NF','CDS end not found',NULL);
+INSERT INTO `master_attrib_type` VALUES (128,'write_access','Write access for Sequence Set','1 for writable , 0 for read-only');
+INSERT INTO `master_attrib_type` VALUES (129,'hidden','Hidden Sequence Set',NULL);
+INSERT INTO `master_attrib_type` VALUES (130,'vega_name','Vega name','Vega seq_region.name');
+INSERT INTO `master_attrib_type` VALUES (131,'vega_export_mod','Export mode','E (External), I (Internal) etc');
+INSERT INTO `master_attrib_type` VALUES (132,'vega_release','Vega release','Vega release number');
+INSERT INTO `master_attrib_type` VALUES (133,'atag_CLE','Clone_left_end','Clone_lef_end feature marked in GAP database');
+INSERT INTO `master_attrib_type` VALUES (134,'atag_CRE','Clone_right_end','Clone_right_end feature marked in GAP database');
+INSERT INTO `master_attrib_type` VALUES (135,'atag_Misc','Misc','miscellaneous feature marked in GAP database');
+INSERT INTO `master_attrib_type` VALUES (136,'atag_Unsure','Unsure','region of uncertain DNA sequence marked in GAP database');
+INSERT INTO `master_attrib_type` VALUES (137,'MultAssem','Multiple Assembled seq region','Part of Seq Region is part of more than one assembly');
+INSERT INTO `master_attrib_type` VALUES (140,'wgs','WGS contig','WGS contig integrated into the map');
+INSERT INTO `master_attrib_type` VALUES (141,'bac','AGP clones','tiling path of clones');
+INSERT INTO `master_attrib_type` VALUES (142,'GeneGC','Gene GC',' Percentage GC content for this gene');
+INSERT INTO `master_attrib_type` VALUES (143,'TotAssemblyLeng','Finished sequence length','Length of the assembly not counting sequence gaps');
+INSERT INTO `master_attrib_type` VALUES (144,'amino_acid_sub','Amino acid substitution','Some translations have been manually curated for amino acid substitiutions. For example a stop codon may be changed to an amino acid in order to prevent premature truncation, or one amino acid can be substituted for another.');
+INSERT INTO `master_attrib_type` VALUES (145,'_rna_edit','rna_edit','RNA edit');
+INSERT INTO `master_attrib_type` VALUES (146,'kill_reason','Kill Reason','Reason why a transcript has been killed');
+INSERT INTO `master_attrib_type` VALUES (147,'strip_UTR','Strip UTR','Transcript needs bad UTR removing');
+INSERT INTO `master_attrib_type` VALUES (148,'TotAssLength','Finished sequence length','Finished Sequence');
+INSERT INTO `master_attrib_type` VALUES (149,'PsCount','pseudogene','Number of Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (152,'TotPTCount','total_processed_transcript','Total Number of Processed Transcripts');
+INSERT INTO `master_attrib_type` VALUES (153,'TotPCCount','total_protein_coding','Total Number of Protein Coding');
+INSERT INTO `master_attrib_type` VALUES (154,'NovNcCount','novel_non_coding','Number of Novel Non Coding');
+INSERT INTO `master_attrib_type` VALUES (155,'KnwnPolyPsCount','known_polymorphic','Number of Known Polymorphic Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (156,'PolyPsCount','polymorphic_pseudogene','Number of Polymorphic Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (157,'TotIGGeneCount','total_IG_gene','Total Number of IG Genes');
+INSERT INTO `master_attrib_type` VALUES (158,'ProcPsCount','proc_pseudogene','Number of Processed Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (159,'UnPsCount','unproc_pseudogene','Number of Unprocessed Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (160,'TPsCount','transcribed_pseudogene','Number of Transcribed Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (161,'TECCount','TEC','Number of TEC Genes');
+INSERT INTO `master_attrib_type` VALUES (162,'KnwnIGGeneCount','IG_gene_KNOWN','Number of Known IG Genes');
+INSERT INTO `master_attrib_type` VALUES (163,'KnwnIGPsGeCount','IG_pseudogene_KNOWN','Number of Known IG Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (164,'IsoPoint','Isoelectric point','Pepstats attributes');
+INSERT INTO `master_attrib_type` VALUES (165,'Charge','Charge','Pepstats attributes');
+INSERT INTO `master_attrib_type` VALUES (166,'MolecularWeight','Molecular weight','Pepstats attributes');
+INSERT INTO `master_attrib_type` VALUES (167,'NumResidues','Number of residues','Pepstats attributes');
+INSERT INTO `master_attrib_type` VALUES (168,'AvgResWeight','Ave. residue weight','Pepstats attributes');
+INSERT INTO `master_attrib_type` VALUES (170,'initial_met','Initial methionine','Set first amino acid to methionine');
+INSERT INTO `master_attrib_type` VALUES (171,'NonGapHCov','NonGapHCov',NULL);
+INSERT INTO `master_attrib_type` VALUES (172,'otter_support','otter support','Evidence ID that was used as supporting feature for building a gene in Vega');
+INSERT INTO `master_attrib_type` VALUES (173,'enst_link','enst link','Code to link a OTTT with an ENST when they both share the CDS of ENST');
+INSERT INTO `master_attrib_type` VALUES (174,'upstream_ATG','upstream ATG','Alternative ATG found upstream of the defined as start ATG for the transcript');
+INSERT INTO `master_attrib_type` VALUES (175,'TPPsCount','transcribed_processed_pseudogene','Number of Transcribed Processed Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (176,'TUPsCount','transcribed_unprocessed_pseudogene','Number of Transcribed Unprocessed Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (177,'UniPsCount','unitary_pseudogene','Number of Unitary Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (178,'KnwnTECCount','TEC_KNOWN','Number of Known TEC genes');
+INSERT INTO `master_attrib_type` VALUES (179,'TotTECGeneCount','TEC_all','Total number of TEC genes');
+INSERT INTO `master_attrib_type` VALUES (180,'TUyPsCount','transcribed_unitary_pseudogene','Number of Transcribed Unitary Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (181,'PolyCount','polymorphic','Number of Polymorphic Genes');
+INSERT INTO `master_attrib_type` VALUES (182,'KnwnPolyCount','polymorphic','Number of Known Polymorphic Genes');
+INSERT INTO `master_attrib_type` VALUES (183,'KnwnTRCount','TR_gene_known','Number of Known TR Genes');
+INSERT INTO `master_attrib_type` VALUES (184,'TRGeneCount','TR_gene','Number of TR Genes');
+INSERT INTO `master_attrib_type` VALUES (185,'TRPsCount','TR_pseudo','Number of TR Pseudogenes');
+INSERT INTO `master_attrib_type` VALUES (186,'tp_ott_support','otter protein transcript support Evidence ID that was used as supporting feature for building a gene in Vega',NULL);
+INSERT INTO `master_attrib_type` VALUES (187,'td_ott_support','otter dna transcript support Evidence ID that was used as supporting feature for building a gene in Vega',NULL);
+INSERT INTO `master_attrib_type` VALUES (188,'ep_ott_support','otter protein exon support Evidence ID that was used as supporting feature for building a gene in Vega',NULL);
+INSERT INTO `master_attrib_type` VALUES (189,'ed_ott_support','otter dna exon support Evidence ID that was used as supporting feature for building a gene in Vega',NULL);
+INSERT INTO `master_attrib_type` VALUES (190,'GeneNo_lincRNA','lincRNA Gene Count','Number of lincRNA Genes');
+INSERT INTO `master_attrib_type` VALUES (191,'StopGained','SNP causes stop codon to be gained','This transcript has a variant that causes a stop codon to be gained in at least 10 percent of a HapMap population');
+INSERT INTO `master_attrib_type` VALUES (192,'StopLost','SNP causes stop codon to be lost','This transcript has a variant that causes a stop codon to be lost in at least 10 percent of a HapMap population');
+INSERT INTO `master_attrib_type` VALUES (193,'GeneNo_class_I_','class_I_RNA Gene Count','Number of class_I_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (194,'GeneNo_SRP_RNA ','SRP_RNA Gene Count','Number of SRP_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (195,'GeneNo_class_II','class_II_RNA Gene Count','Number of class_II_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (196,'GeneNo_P_RNA','RNase_P_RNA Gene Count','Number of RNase_P_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (197,'GeneNo_RNase_MR','RNase_MRP_RNA Gene Count','Number of RNase_MRP_RNA Genes');
+INSERT INTO `master_attrib_type` VALUES (198,'lost_frameshift','lost_frameshift','Frameshift on the query sequence is lost in the target sequence');
+INSERT INTO `master_attrib_type` VALUES (199,'AltThreePrime','Alternate three prime end','The position of other possible three prime ends for the transcript');
+INSERT INTO `master_attrib_type` VALUES (216,'GeneInLRG','Gene in LRG','This gene is contained within an LRG region');
+INSERT INTO `master_attrib_type` VALUES (217,'GeneOverlapLRG','Gene overlaps LRG','This gene is partially overlapped by a LRG region (start or end outside LRG)');
+INSERT INTO `master_attrib_type` VALUES (218,'readthrough_tra','readthrough transcript','Havana readthrough transcripts');
+INSERT INTO `master_attrib_type` VALUES (300,'CNE','Constitutive exon','An exon that is always included in the mature mRNA, even in different mRNA isoforms');
+INSERT INTO `master_attrib_type` VALUES (301,'CE','Cassette exon','One exon is spliced out of the primary transcript together with its flanking introns');
+INSERT INTO `master_attrib_type` VALUES (302,'IR','Intron retention','A sequence is spliced out as an intron or remains in the mature mRNA transcript');
+INSERT INTO `master_attrib_type` VALUES (303,'MXE','Mutually exclusive exons','In the simpliest case, one or two consecutive exons are retained but not both');
+INSERT INTO `master_attrib_type` VALUES (304,'A3SS','Alternative 3\' sites','Two or more splice sites are recognized at the 5\' end of an exon. An alternative 3\' splice junction (acceptor site) is used, changing the 5\' boundary of the downstream exon');
+INSERT INTO `master_attrib_type` VALUES (305,'A5SS','Alternative 5\' sites','Two or more splice sites are recognized at the 3\' end of an exon. An alternative 5\' splice junction (donor site) is used, changing the 3\' boundary of the upstream exon');
+INSERT INTO `master_attrib_type` VALUES (306,'AFE','Alternative first exon','The second exons of each variant have identical boundaries, but the first exons do not overlap');
+INSERT INTO `master_attrib_type` VALUES (307,'ALE','Alternative last exon','Penultimate exons of each splice variant have identical boundaries, but the last exons do not overlap');
+INSERT INTO `master_attrib_type` VALUES (308,'II','Intron isoform','Alternative donor or acceptor splice sites lead to truncation or extension of introns, respectively');
+INSERT INTO `master_attrib_type` VALUES (309,'EI','Exon isoform','Alternative donor or acceptor splice sites leads to truncation or extension of exons, respectively');
+INSERT INTO `master_attrib_type` VALUES (310,'AI','Alternative initiation','Alternative choice of promoters');
+INSERT INTO `master_attrib_type` VALUES (311,'AT','Alternative termination','Alternative choice of polyadenylation sites');
+INSERT INTO `master_attrib_type` VALUES (312,'patch_fix','Assembly Patch Fix','Assembly patch that will, in the next assembly release, replace the corresponding sequence found in the current assembly');
+INSERT INTO `master_attrib_type` VALUES (313,'patch_novel','Assembly Patch Novel','Assembly patch that will, in the next assembly release, be retained as an alternate non-reference sequence in a similar way to haplotypes');
+INSERT INTO `master_attrib_type` VALUES (314,'LRG','Locus Reference Genomic','Locus Reference Genomic sequence');
+INSERT INTO `master_attrib_type` VALUES (315,'NoEvidence','Evidence for transcript removed','Supporting evidence for this projected transcript has been removed');
+INSERT INTO `master_attrib_type` VALUES (316,'circular_seq','Circular sequence','Circular chromosome or plasmid mmolecule');
+INSERT INTO `master_attrib_type` VALUES (317,'external_db','External database','External database to which seq_region name may be linked');
+
+--
+-- Table structure for table `master_external_db`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `master_external_db` (
+ `external_db_id` smallint(5) unsigned NOT NULL,
+ `db_name` varchar(100) NOT NULL,
+ `db_release` varchar(255) DEFAULT NULL,
+ `status` enum('KNOWNXREF','KNOWN','XREF','PRED','ORTH','PSEUDO') NOT NULL,
+ `dbprimary_acc_linkable` tinyint(1) NOT NULL DEFAULT '1',
+ `display_label_linkable` tinyint(1) NOT NULL DEFAULT '0',
+ `priority` int(11) NOT NULL,
+ `db_display_name` varchar(255) DEFAULT NULL,
+ `type` enum('ARRAY','ALT_TRANS','ALT_GENE','MISC','LIT','PRIMARY_DB_SYNONYM','ENSEMBL') DEFAULT NULL,
+ `secondary_db_name` varchar(255) DEFAULT NULL,
+ `secondary_db_table` varchar(255) DEFAULT NULL,
+ `description` text,
+ PRIMARY KEY (`external_db_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `master_external_db`
+--
+-- ORDER BY: `external_db_id`
+
+INSERT INTO `master_external_db` VALUES (210,'Anopheles_symbol',NULL,'KNOWN',1,0,50,'Anopheles symbol','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (211,'VB_Community_Symbol',NULL,'KNOWN',1,0,50,'VB Community Symbol','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (212,'VB_External_Description','1','PRED',1,0,50,'VB External Description','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (213,'VB_RNA_Description','1','PRED',1,0,50,'VB RNA Description','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (214,'VB_Community_Annotation','1','KNOWN',1,0,50,'VB Community Annotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (250,'ImmunoDB','1','KNOWN',1,0,50,'ImmunoDB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (300,'BRIGGSAE_HYBRID',NULL,'KNOWNXREF',1,0,5,'Briggsae Hybrid','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (400,'Celera_Gene',NULL,'PRED',1,0,5,'Celera gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (410,'Celera_Pep',NULL,'PRED',1,0,5,'Celera peptide','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (420,'Celera_Trans',NULL,'PRED',1,0,5,'Celera transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (600,'DROS_ORTH',NULL,'ORTH',1,0,5,'DROS ORTH','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (700,'EMBL',NULL,'KNOWNXREF',1,0,5,'European Nucleotide Archive (was EMBL)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (701,'EMBL_predicted',NULL,'PRED',1,0,4,'Predicted European Nucleotide Archive (was EMBL)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (800,'flybase_gene_id',NULL,'KNOWNXREF',1,0,5,'Flybase Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (801,'flybase_translation_id',NULL,'KNOWNXREF',1,0,5,'Flybase translation ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (802,'flybase_gff',NULL,'KNOWNXREF',1,0,5,'Flybase GFF','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (803,'flybase_polypeptide_id',NULL,'KNOWNXREF',1,0,5,'Flybase Polypeptide ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (804,'flybase_annotation_id',NULL,'KNOWNXREF',1,0,5,'Flybase Annotation ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (805,'flybase_symbol',NULL,'KNOWNXREF',1,0,50,'Flybase Symbol','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (806,'flybase_synonym',NULL,'KNOWNXREF',1,0,5,'Flybase Synonym','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (807,'flybase_name',NULL,'KNOWNXREF',1,0,5,'Flybase Name','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (808,'flybase_transcript_id',NULL,'KNOWNXREF',1,0,5,'Flybase transcript ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (810,'gadfly_gene_cgid',NULL,'XREF',1,0,10,'Gadfly gene CGID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (811,'gadfly_transcript_cgid',NULL,'XREF',1,0,10,'Gadfly transcript CGID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (812,'gadfly_translation_cgid',NULL,'XREF',1,0,10,'Gadfly translation CGID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (821,'FlyBaseName_gene',NULL,'KNOWN',1,0,5,'FlyBaseName gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (824,'FlyBaseName_translation',NULL,'KNOWN',1,0,5,'FlyBaseName translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (825,'FlyBaseName_transcript',NULL,'XREF',1,0,50,'FlyBaseName transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (826,'FlyBaseCGID_gene',NULL,'XREF',1,0,5,'FlyBaseCGID gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (827,'FlyBaseCGID_transcript',NULL,'XREF',1,0,50,'FlyBaseCGID transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (828,'FlyBaseCGID_translation',NULL,'XREF',1,0,50,'FlyBaseCGID translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (829,'BioGRID',NULL,'KNOWNXREF',1,0,5,'BioGRID Interaction data, The General Repository for Interaction Datasets gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (830,'FlyExpress',NULL,'KNOWNXREF',1,0,5,'FlyExpress, expression patterns of developmentally relevant genes in Drosophila embryogenesis gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (831,'GenomeRNAi',NULL,'KNOWNXREF',1,0,5,'GenomeRNAi, a database for cell-based RNAi phenotypes gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (832,'InteractiveFly',NULL,'KNOWNXREF',0,1,5,'The Interactive Fly gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (833,'MitoDrome',NULL,'KNOWNXREF',1,0,5,'Nuclear genes encoding proteins targeted to the mitochondrion gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (880,'BDGP_insitu_expr',NULL,'KNOWNXREF',1,0,5,'Berkeley Drosophila Genome Project in situ Gene Expression Database (embryogenesis)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (882,'FlyGrid',NULL,'KNOWNXREF',1,0,5,'FlyGRID Interaction Data, The General Repository for Interaction Datasets','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (883,'FlyReactome',NULL,'KNOWNXREF',1,0,5,'FlyReactome, a Curated Knowledgebase of Drosophila Melanogaster Pathways','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (890,'DEDb',NULL,'KNOWNXREF',1,0,5,'Drosophila melanogaster Exon Database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (900,'GKB',NULL,'XREF',1,0,5,'GKB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1000,'GO',NULL,'XREF',1,0,5,'GO','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1100,'HGNC',NULL,'KNOWNXREF',1,1,100,'HGNC Symbol','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1200,'Interpro',NULL,'XREF',1,0,5,'InterPro','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1300,'EntrezGene',NULL,'KNOWNXREF',1,0,10,'EntrezGene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1400,'MGI',NULL,'KNOWNXREF',1,1,50,'MGI Symbol','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1500,'MIM',NULL,'KNOWNXREF',1,0,5,'MIM','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1510,'MIM_GENE',NULL,'KNOWNXREF',1,0,5,'MIM gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1520,'MIM_MORBID',NULL,'KNOWNXREF',1,0,5,'MIM disease','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1600,'PDB',NULL,'KNOWNXREF',1,0,5,'PDB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1700,'protein_id',NULL,'KNOWNXREF',1,0,5,'Protein ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1701,'protein_id_predicted',NULL,'PRED',1,0,4,'Predicted Protein ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1800,'RefSeq_dna',NULL,'KNOWN',1,0,25,'RefSeq DNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1805,'RefSeq_dna_predicted',NULL,'PRED',1,0,15,'RefSeq DNA predicted','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1810,'RefSeq_peptide',NULL,'KNOWN',1,0,26,'RefSeq peptide','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1815,'RefSeq_peptide_predicted',NULL,'PRED',1,0,16,'RefSeq peptide predicted','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1820,'RefSeq_rna',NULL,'KNOWN',1,0,24,'RefSeq RNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1825,'RefSeq_rna_predicted',NULL,'PRED',1,0,14,'RefSeq RNA predicted','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1830,'RefSeq_genomic',NULL,'KNOWN',1,0,23,'RefSeq Genomic','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1900,'Sanger_Hver1_2_1',NULL,'XREF',1,0,5,'Sanger Hver 121','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1901,'Sanger_Hver1_3_1',NULL,'XREF',1,0,5,'Sanger Hver 131','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1902,'SNGR_Hver',NULL,'XREF',1,0,5,'Sanger Hver','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (1910,'Sanger_Mver1_1_1',NULL,'XREF',1,0,5,'Sanger Hver 111','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2000,'Uniprot/SPTREMBL',NULL,'KNOWN',1,0,20,'UniProtKB/TrEMBL','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2001,'Uniprot/SPTREMBL_predicted',NULL,'PRED',1,0,15,'Predicted UniProtKB/TrEMBL','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2010,'prediction_SPTREMBL',NULL,'XREF',1,1,10,'Prediction UniProtKB/TrEMBL','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2100,'Superfamily',NULL,'KNOWNXREF',1,0,5,'Superfamily','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2200,'Uniprot/SWISSPROT',NULL,'KNOWN',1,1,30,'UniProtKB/Swiss-Prot','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2201,'Uniprot/SWISSPROT_predicted',NULL,'PRED',1,1,15,'Predicted UniProtKB/Swiss-Prot','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2202,'Uniprot/Varsplic',NULL,'KNOWN',1,1,15,'UniprotKB/SpliceVariant','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2250,'UniProtKB_all',NULL,'XREF',1,0,40,'UniProtKB generic accession number (TrEMBL or SwissProt not differentiated)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2300,'Vega_gene',NULL,'KNOWNXREF',1,0,5,'Vega gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2305,'Vega_gene_like',NULL,'XREF',1,0,5,'Vega gene like','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2310,'Vega_transcript',NULL,'KNOWNXREF',1,0,5,'Vega transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2315,'Vega_transcript_like',NULL,'XREF',1,0,5,'Vega transcript like','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2320,'Vega_translation',NULL,'KNOWNXREF',1,0,5,'Vega translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2400,'wormbase_gene',NULL,'KNOWN',1,0,5,'Wormbase Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2410,'wormbase_transcript',NULL,'KNOWN',1,0,5,'Wormbase Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2420,'wormpep_id',NULL,'KNOWN',1,0,5,'Wormpep ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2430,'wormbase_pseudogene',NULL,'PSEUDO',1,0,5,'Wormbase Pseudogene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2440,'wormbase_locus',NULL,'KNOWN',1,0,5,'Wormbase Locus','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2510,'ZFIN_ID',NULL,'KNOWNXREF',1,1,5,'ZFIN','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2530,'ZFIN_xpat',NULL,'KNOWNXREF',1,0,4,'ZFIN expression patterns','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2600,'GeneDB',NULL,'KNOWN',1,0,5,'GeneDB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2601,'cint_jgi_v1',NULL,'KNOWN',1,0,10,'JGI Gene ID (JGI 1.0)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2602,'cint_jgi_v2',NULL,'KNOWN',1,0,5,'JGI Gene ID (JGI 2.0)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2610,'cint_aniseed_v1',NULL,'KNOWN',1,0,5,'ANISEED (JGI 1.0)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2611,'cint_aniseed_v2',NULL,'KNOWN',1,0,5,'ANISEED (JGI 2.0)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2700,'Ens_Hs_gene',NULL,'XREF',1,0,5,'Ensembl Human Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2710,'Ens_Hs_transcript',NULL,'XREF',1,0,5,'Ensembl Human Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2720,'Ens_Hs_translation',NULL,'XREF',1,0,5,'Ensembl Human Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2800,'RGD',NULL,'KNOWNXREF',1,1,50,'RGD Symbol','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2900,'Genoscope_pred_gene',NULL,'XREF',1,0,38,'Genoscope pred gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2910,'Genoscope_pred_transcript',NULL,'XREF',1,0,39,'Genoscope pred transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2920,'Genoscope_annotated_gene',NULL,'KNOWN',1,0,40,'Genoscope annotated gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2930,'Genoscope_pred_translation',NULL,'XREF',1,0,40,'Genoscope pred translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2940,'Genoscope_ann_transcript',NULL,'KNOWN',1,0,40,'Genoscope annotated transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (2950,'Genoscope_ann_translation',NULL,'KNOWN',1,0,40,'Genoscope annotated translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3300,'miRBase',NULL,'KNOWNXREF',1,0,1,'miRBase','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3310,'miRBase_predicted',NULL,'XREF',1,0,1,'miRBase predicted','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3400,'SGD',NULL,'KNOWN',1,1,50,'SGD','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3500,'IPI',NULL,'KNOWN',1,0,5,'IPI','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3800,'CCDS',NULL,'KNOWN',1,0,50,'CCDS','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (3900,'PUBMED',NULL,'KNOWN',1,0,5,'Sequence Publications','LIT',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4000,'MEDLINE',NULL,'KNOWN',1,0,5,'MEDLINE','LIT',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4100,'UniGene',NULL,'KNOWN',1,0,5,'UniGene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4200,'RFAM',NULL,'XREF',1,0,5,'RFAM','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4400,'Xenopus_Jamboree',NULL,'KNOWN',1,0,1,'Jamboree','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4500,'Tiffin',NULL,'XREF',1,0,1,'Tiffin DNA motifs','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4600,'OTTG',NULL,'XREF',1,0,1,'Havana gene','ALT_GENE',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4610,'OTTT',NULL,'XREF',1,0,1,'Havana transcript','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4620,'OTTP',NULL,'XREF',1,0,1,'Havana translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4650,'shares_CDS_with',NULL,'XREF',1,0,1,'transcript having same CDS','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4660,'shares_CDS_with_ENST',NULL,'XREF',1,0,1,'Imported HAVANA transcripts (Shares CDS with ENST)','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4670,'shares_CDS_with_OTTT',NULL,'XREF',1,0,1,'Havana transcript having same CDS','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4680,'shares_CDS_and_UTR_with_OTTT',NULL,'XREF',1,0,1,'Transcript having exact match between ENSEMBL and HAVANA','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4690,'ENSG',NULL,'XREF',1,0,1,'Ensembl gene','ALT_GENE',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4700,'Medaka',NULL,'XREF',1,0,1,'Medaka Genome Project','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4800,'ENST',NULL,'XREF',1,0,1,'Ensembl transcript having exact match with Havana','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4810,'ENST_ident',NULL,'XREF',1,0,1,'Ensembl transcript having exact match with Havana','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4820,'ENST_CDS',NULL,'XREF',1,0,1,'Ensembl transcript sharing CDS with Havana','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (4900,'TCAG',NULL,'KNOWN',1,0,75,'TCAG Chr 7 Annotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5000,'Ens_Mm_gene',NULL,'XREF',1,0,40,'Ensembl Mouse Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5010,'Ens_Mm_transcript',NULL,'XREF',1,0,40,'Ensembl Mouse Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5020,'Ens_Mm_translation',NULL,'XREF',1,0,40,'Ensembl Mouse Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5100,'IMGT_HLA',NULL,'KNOWN',1,0,7,'IMGT/HLA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5200,'Oxford_FGU_Md_gene',NULL,'PRED',1,0,1,'Oxford Ponting Group Monodelphis predictions gene id','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5300,'Oxford_FGU_Md_tscript',NULL,'PRED',1,0,1,'Oxford Ponting Group Monodelphis predictions transcript id','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5400,'Oxford_FGU_Oa_gene',NULL,'PRED',1,0,1,'Oxford Ponting Group Platypus predictions gene id','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5500,'Oxford_FGU_Oa_tscript',NULL,'PRED',1,0,1,'Oxford Ponting Group Platypus predictions transcript id','ALT_TRANS',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5700,'Ens_Cf_gene',NULL,'XREF',1,0,5,'Ensembl Dog Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5710,'Ens_Cf_transcript',NULL,'XREF',1,0,5,'Ensembl Dog Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5720,'Ens_Cf_translation',NULL,'XREF',1,0,5,'Ensembl Dog Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5800,'Ens_Dr_gene',NULL,'XREF',1,0,5,'Ensembl Zebrafish Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5810,'Ens_Dr_transcript',NULL,'XREF',1,0,5,'Ensembl Zebrafish Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5820,'Ens_Dr_translation',NULL,'XREF',1,0,5,'Ensembl Zebrafish Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5900,'Ens_Md_gene',NULL,'XREF',1,0,5,'Ensembl Monodelphis Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (5901,'Ens_Md_transcript',NULL,'XREF',1,0,5,'Ensembl Monodelphis Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6100,'Havana_gene',NULL,'XREF',1,0,100,'Havana gene ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6200,'Ens_Rn_gene',NULL,'XREF',1,0,5,'Ensembl Rat Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6300,'Ens_Ol_gene',NULL,'XREF',1,0,5,'Ensembl Medaka Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6400,'Ens_Gg_gene',NULL,'XREF',1,0,40,'Ensembl Chicken Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6410,'Ens_Gg_transcript',NULL,'XREF',1,0,40,'Ensembl Chicken Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6420,'Ens_Gg_translation',NULL,'XREF',1,0,40,'Ensembl Chicken Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6500,'IMCB_Tr_gene',NULL,'XREF',1,0,40,'IMCB Fugu Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6600,'Ens_Ag_gene',NULL,'XREF',1,0,5,'Ensembl Mosquito Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6630,'Ens_Am_gene',NULL,'XREF',1,0,5,'Ensembl Bee Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6660,'Ens_Ce_gene',NULL,'XREF',1,0,5,'Ensembl Worm Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6690,'Ens_Dm_gene',NULL,'XREF',1,0,5,'Ensembl FruitFly Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6720,'Ens_Fr_gene',NULL,'XREF',1,0,5,'Ensembl Fugu Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6750,'Ens_Pt_gene',NULL,'XREF',1,0,5,'Ensembl Chimpanzee Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6780,'Ens_Rn_gene',NULL,'XREF',1,0,5,'Ensembl Rat Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6810,'Ens_Tn_gene',NULL,'XREF',1,0,5,'Ensembl PufferFish Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (6820,'Ens_Tr_transcript',NULL,'XREF',1,0,40,'Ensembl Fugu Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7120,'Ens_Aa_translation',NULL,'XREF',1,0,40,'Ensembl Aedes Translation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7159,'AedesGenBank',NULL,'PRED',1,0,30,'Aedes GenBank','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7160,'Aedes_ManualAnnotation',NULL,'PRED',1,0,30,'Aedes ManualAnnotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7170,'Ixodes_ManualAnnotation',NULL,'PRED',1,0,30,'Ixodes ManualAnnotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7180,'VB_Community_Annotation',NULL,'KNOWN',1,0,30,'VB Community Annotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7200,'IMGT/LIGM_DB',NULL,'XREF',1,1,10,'IMGT/LIGM-DB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (7201,'IMGT/GENE_DB',NULL,'KNOWN',1,0,40,'IMGT/GENE-DB','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8000,'Vega_mouse_transcript',NULL,'XREF',1,0,5,'Vega mouse transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8100,'Platypus_olfactory_receptor',NULL,'XREF',1,0,40,'Platypus olfactory receptor gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8200,'PRF',NULL,'XREF',1,0,5,'PRF','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8300,'PIR',NULL,'XREF',1,0,5,'PIR','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8400,'TetNig_cdna',NULL,'XREF',1,0,40,'Genoscope tetraodon cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8500,'GasAcu_cdna',NULL,'XREF',1,0,40,'Stickleback cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8600,'OrnAna_454_cdna',NULL,'XREF',1,0,40,'Platypus 454 cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8700,'TakRub_cdna',NULL,'XREF',1,0,40,'Takifugu cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8800,'CioInt_est',NULL,'XREF',1,0,40,'Ciona intestinalis EST','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (8900,'CioInt_cdna',NULL,'XREF',1,0,40,'Ciona intestinalis cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9000,'CaeEle_est',NULL,'XREF',1,0,40,'C Elegans EST','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9100,'XenTro_Gurdon_EST',NULL,'XREF',1,0,40,'Xenopus Gurdon EST Clusters','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9110,'XenTro_cdna',NULL,'XREF',1,0,40,'Xenopus Tropicalis cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9120,'XenLae_cdna',NULL,'XREF',1,0,40,'Xenopus Laevis cDNA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9200,'TakRub_est',NULL,'XREF',1,0,40,'Takifugu EST','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9210,'TakRub_annotation',NULL,'XREF',1,0,40,'Takifugu gene annotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9220,'TakRub_seleno_annotation',NULL,'XREF',1,0,40,'Takifugu selenoprotein annotation','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9400,'TetNig_mouse_econtig',NULL,'XREF',1,0,40,'Genoscope mouse exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9410,'TetNig_fugu_econtig',NULL,'XREF',1,0,40,'Genoscope fugu exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9420,'TetNig_human_econtig',NULL,'XREF',1,0,40,'Genoscope human exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9430,'TetNig_human_IPI_econtig',NULL,'XREF',1,0,40,'Genoscope human IPI exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9440,'TetNig_mouse_IPI_econtig',NULL,'XREF',1,0,40,'Genoscope mouse IPI exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9450,'TetNig_rat_econtig',NULL,'XREF',1,0,40,'Genoscope rat exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9460,'TetNig_chick_econtig',NULL,'XREF',1,0,40,'Genoscope chicken exofish econtig','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9500,'OryLat_est',NULL,'XREF',1,0,40,'Medaka EST','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9600,'Trace_archive',NULL,'XREF',1,0,40,'Trace Archive id','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9700,'CioSav_est',NULL,'XREF',1,0,40,'Ciona savignyi EST','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9800,'kyotograil_2004',NULL,'PRED',1,0,30,'Ciona intestinalis Kyotograil 2004 predictions','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (9900,'kyotograil_2005',NULL,'PRED',1,0,30,'Ciona intestinalis Kyotograil 2005 predictions','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10000,'wormbase_id',NULL,'XREF',1,0,30,'Generic exdb for worbase id of any type for feature table','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10100,'EPD',NULL,'KNOWNXREF',1,0,5,'Eukaryotic Promoter Database (Bucher)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10200,'GPCR',NULL,'KNOWNXREF',1,0,5,'The G protein-coupled receptor database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10300,'MEROPS',NULL,'KNOWNXREF',1,0,5,'MEROPS - the Peptidase Database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10500,'TransFac',NULL,'KNOWNXREF',1,0,5,'TransFac, database of transcription factors and their binding sites','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10600,'modCB_gene',NULL,'KNOWNXREF',1,0,5,'Caenorhabditis briggsae, InParanoid model organism database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10700,'modCE_gene',NULL,'KNOWNXREF',1,0,5,'Caenorhabditis elegans, InParanoid model organism database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10800,'modDD_gene',NULL,'KNOWNXREF',1,0,5,'Dictyostelium discoideum, InParanoid model organism database','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (10900,'GI',NULL,'XREF',1,0,5,'GenInfo Identifier, a sequence identification number for a nucleotide sequence','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (11000,'UCSC',NULL,'KNOWNXREF',1,0,100,'UCSC Stable ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (11100,'Culex_ncRNA',NULL,'XREF',1,0,70,'Culex ncRNAs','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12300,'HGNC_curated_gene',NULL,'KNOWNXREF',1,0,5,'HGNC (curated)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12305,'HGNC_automatic_gene',NULL,'KNOWNXREF',1,0,5,'HGNC (automatic)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12310,'Clone_based_vega_gene',NULL,'KNOWNXREF',1,0,5,'Clone-based (Vega)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12315,'Clone_based_ensembl_gene',NULL,'XREF',1,0,5,'Clone-based (Ensembl)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12400,'HGNC_curated_transcript',NULL,'KNOWNXREF',1,0,5,'HGNC (curated)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12405,'HGNC_automatic_transcript',NULL,'KNOWNXREF',1,0,5,'HGNC (automatic)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12410,'Clone_based_vega_transcript',NULL,'KNOWNXREF',1,0,5,'Clone-based (Vega)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12415,'Clone_based_ensembl_transcript',NULL,'XREF',1,0,5,'Clone-based (Ensembl)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12500,'DBASS3',NULL,'XREF',1,0,50,'DataBase of Aberrant 3\' Splice Sites','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12505,'DBASS5',NULL,'XREF',1,0,50,'DataBase of Aberrant 5\' Splice Sites','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12510,'HPA',NULL,'XREF',1,0,50,'Human Protein Atlas','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12550,'MGI_curated_gene',NULL,'KNOWNXREF',1,0,5,'MGI (curated)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12555,'MGI_automatic_gene',NULL,'KNOWNXREF',1,0,5,'MGI (automatic)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12560,'MGI_curated_transcript',NULL,'KNOWNXREF',1,0,5,'MGI (curated)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12565,'MGI_automatic_transcript',NULL,'KNOWNXREF',1,0,5,'MGI (automatic)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12600,'WikiGene',NULL,'XREF',0,1,50,'WikiGene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12601,'Tgut_symbol',NULL,'KNOWNXREF',0,0,100,'Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12610,'Fantom',NULL,'XREF',0,1,50,'Fantom','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12620,'Duck_consortium',NULL,'XREF',0,0,0,'Duck consortium','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12630,'BGI_duck_transcriptome',NULL,'XREF',0,0,0,'Beijing Genomics Institute (BGI) duck transcriptome','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12700,'goslim_goa',NULL,'XREF',1,0,5,'GOSlim GOA','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12710,'WTSI_gorilla_transcriptome',NULL,'XREF',0,0,0,'Wellcome Trust Sanger Institute (WTSI) gorilla transcriptome','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (12720,'WTSI_zebrafish_transcriptome',NULL,'XREF',0,0,0,'Wellcome Trust Sanger Institute (WTSI) zebrafish transcriptome','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20005,'UniParc',NULL,'KNOWNXREF',1,0,0,'UniParc','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20008,'BRENDA',NULL,'KNOWNXREF',1,0,0,'BRENDA','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20009,'BioCyc',NULL,'KNOWNXREF',1,0,0,'BioCyc','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20010,'BuruList',NULL,'KNOWNXREF',1,0,0,'BuruList','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20013,'EchoBASE',NULL,'KNOWNXREF',1,0,0,'EchoBASE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20014,'EcoGene',NULL,'KNOWNXREF',1,0,0,'EcoGene','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20017,'GeneDB_Spombe',NULL,'KNOWNXREF',1,0,0,'GeneDB_Spombe','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20025,'Leproma',NULL,'KNOWNXREF',1,0,0,'Leproma','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20031,'2DBase_Ecoli',NULL,'KNOWNXREF',1,0,0,'2DBase-Ecoli','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20038,'SagaList',NULL,'KNOWNXREF',1,0,0,'SagaList','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20040,'SubtiList',NULL,'KNOWNXREF',1,0,0,'SubtiList','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20042,'TIGR',NULL,'KNOWNXREF',1,0,0,'TIGR','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20043,'TubercuList',NULL,'KNOWNXREF',1,0,0,'TubercuList','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20046,'ArrayExpress',NULL,'KNOWNXREF',1,0,0,'ArrayExpress','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20050,'GermOnline',NULL,'KNOWNXREF',1,0,0,'GermOnline','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20059,'DIP',NULL,'KNOWNXREF',1,0,0,'DIP','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20061,'DisProt',NULL,'KNOWNXREF',1,0,0,'DisProt','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20062,'DrugBank',NULL,'KNOWNXREF',1,0,0,'DrugBank','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20065,'GlycoSuiteDB',NULL,'KNOWNXREF',1,0,0,'GlycoSuiteDB','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20066,'HAMAP',NULL,'KNOWNXREF',1,0,0,'HAMAP','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20067,'HOGENOM',NULL,'KNOWNXREF',1,0,0,'HOGENOM','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20071,'HSSP',NULL,'KNOWNXREF',1,0,0,'HSSP','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20072,'IntAct',NULL,'KNOWNXREF',1,0,0,'IntAct','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20074,'KEGG',NULL,'KNOWNXREF',1,0,0,'KEGG','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20078,'PDBsum',NULL,'KNOWNXREF',1,0,0,'PDBsum','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20082,'PeroxiBase',NULL,'KNOWNXREF',1,0,0,'PeroxiBase','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20083,'PhosSite',NULL,'KNOWNXREF',1,0,0,'PhosSite','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20084,'PptaseDB',NULL,'KNOWNXREF',1,0,0,'PptaseDB','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20085,'REBASE',NULL,'KNOWNXREF',1,0,0,'REBASE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20088,'Reactome',NULL,'KNOWNXREF',1,0,0,'Reactome','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20090,'SWISS_2DPAGE',NULL,'KNOWNXREF',1,0,0,'SWISS-2DPAGE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20097,'RegulonDb_Transcript',NULL,'KNOWNXREF',1,0,0,'RegulonDb','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20099,'RegulonDb_Gene',NULL,'KNOWNXREF',1,0,0,'RegulonDb','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20101,'IntEnz',NULL,'KNOWNXREF',1,0,0,'EnzymeCommission','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20102,'ArrayExpressExperiment',NULL,'KNOWNXREF',1,0,0,'ArrayExpressExperiment','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20200,'EMBLBANK_GENE',NULL,'KNOWNXREF',0,0,0,'European Nucleotide Archive','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20201,'GeneDB_SPombe_transcript',NULL,'KNOWNXREF',0,0,0,'GeneDB_SPombe','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20202,'EBACTERIA_GENE',NULL,'KNOWNXREF',0,0,0,'e!Bacteria','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20203,'EBACTERIA_TRANSCRIPT',NULL,'KNOWNXREF',0,0,0,'e!Bacteria','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20204,'EPROTIST_GENE',NULL,'KNOWNXREF',0,0,0,'e!Protists','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20205,'EPROTIST_TRANSCRIPT',NULL,'KNOWNXREF',0,0,0,'e!Protists','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20207,'EFUNGI_GENE',NULL,'KNOWNXREF',0,0,0,'e!Fungi','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20208,'EFUNGI_TRANSCRIPT',NULL,'KNOWNXREF',0,0,0,'e!Fungi','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20209,'EMBLBANK_TRANSCRIPT',NULL,'KNOWNXREF',0,0,0,'European Nucleotide Archive','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20210,'GeneDB_SPombe_gene',NULL,'KNOWNXREF',0,0,0,'GeneDB_SPombe','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20214,'phatr_jgi_v2_bd',NULL,'KNOWNXREF',1,0,0,'JGI ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20215,'phatr_jgi_v2',NULL,'KNOWNXREF',1,0,0,'JGI ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20216,'phatr_jgi_v2_bd_gene',NULL,'KNOWNXREF',1,0,0,'JGI Gene ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20217,'phatr_jgi_v2_gene',NULL,'KNOWNXREF',1,0,0,'JGI Gene ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20218,'phatr_jgi_v2_bd_transcript',NULL,'KNOWNXREF',1,0,0,'JGI transcript ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20219,'phatr_jgi_v2_transcript',NULL,'KNOWNXREF',1,0,0,'JGI transcript ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20220,'thaps_jgi_v2_bd',NULL,'KNOWNXREF',1,0,0,'JGI ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20221,'thaps_jgi_v2',NULL,'KNOWNXREF',1,0,0,'JGI ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20222,'thaps_jgi_v2_gene',NULL,'KNOWNXREF',1,0,0,'JGI Gene ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20223,'thaps_jgi_v2_bd_gene',NULL,'KNOWNXREF',1,0,0,'JGI Gene ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20224,'thaps_jgi_v2_gene',NULL,'KNOWNXREF',1,0,0,'JGI Gene ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20225,'thaps_jgi_v2_bd_transcript',NULL,'KNOWNXREF',1,0,0,'JGI transcript ID (JGI 2.0 unmapped sequence)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20226,'thaps_jgi_v2_transcript',NULL,'KNOWNXREF',1,0,0,'JGI transcript ID (JGI 2.0)','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20227,'Diatom_EST_Cluster',NULL,'XREF',1,0,0,'ENS EST Cluster (Diatom ESTDB)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20228,'CADRE_Afum_A1163',NULL,'KNOWNXREF',1,0,0,'CADRE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20301,'RNAMMER',NULL,'KNOWNXREF',1,0,0,'RNAmmer','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20302,'TRNASCAN_SE',NULL,'KNOWNXREF',1,0,0,'tRNAScan-SE','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20303,'dictyBase',NULL,'KNOWNXREF',1,0,0,'DictyBase','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20304,'dictyBase_gene',NULL,'KNOWNXREF',1,0,0,'DictyBase','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20305,'dictyBase_transcript',NULL,'KNOWNXREF',1,0,0,'DictyBase','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20306,'ASPGD',NULL,'KNOWNXREF',1,0,0,'AspGD','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20307,'ASPGD_GENE',NULL,'KNOWNXREF',1,0,0,'AspGD','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20308,'ASPGD_TRANSCRIPT',NULL,'KNOWNXREF',1,0,0,'AspGD','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20309,'CADRE',NULL,'KNOWNXREF',1,0,0,'CADRE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20310,'CADRE_GENE',NULL,'KNOWNXREF',1,0,0,'CADRE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20311,'CADRE_TRANSCRIPT',NULL,'KNOWNXREF',1,0,0,'CADRE','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20312,'SGD_GENE',NULL,'KNOWNXREF',1,0,0,'SGD','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (20313,'SGD_TRANSCRIPT',NULL,'KNOWNXREF',1,0,0,'SGD','PRIMARY_DB_SYNONYM',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50000,'BGI_EST_Cluster',NULL,'XREF',1,0,0,'EST Cluster (BGI Indica)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50005,'EC_NUMBER',NULL,'XREF',1,0,0,'Enzyme EC Number','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50010,'FSTs',NULL,'XREF',1,0,0,'Flanking Sequence Tag (FST)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50015,'gene_name',NULL,'KNOWNXREF',1,0,0,'Gene Name','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50020,'Gramene_Pathway',NULL,'XREF',1,0,0,'Gramene Pathway','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50030,'Gramene_GenesDB',NULL,'KNOWNXREF',1,0,100,'Gramene Curated Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50035,'Gramene_MarkersDB',NULL,'XREF',1,0,0,'Gramene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50040,'Gramene_MarkersDB_mRNA',NULL,'XREF',1,0,0,'GenBank mRNA (Gramene)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50050,'Gramene_MarkersDB_EST',NULL,'XREF',1,0,0,'GenBank EST (Gramene)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50060,'IRGSP_Gene',NULL,'XREF',1,0,0,'IRGSP/RAP Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50065,'KOME',NULL,'KNOWNXREF',1,0,0,'Full Length cDNA (KOME)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50070,'miRNA_Accession',NULL,'XREF',1,0,0,'miRNA miRBase accession','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50080,'miRNA_Registry',NULL,'XREF',1,0,1,'miRNA Registry','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50090,'NASC_GENE_ID',NULL,'XREF',1,0,1,'NASC Gene ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50100,'NASC_TRANSCRIPT_ID',NULL,'XREF',1,0,1,'NASC Transcript ID','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50110,'PlantGDB_PUT',NULL,'XREF',1,0,1,'PlantGDB Transcript','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50120,'RAP_Gene',NULL,'XREF',1,0,0,'IRGSP/RAP Gene','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50130,'siRNA_Sunkar',NULL,'XREF',1,0,0,'siRNA ID from Sunkar et. al. 2005 NAR 33(14):4443-54','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50140,'TIGR_LOCUS',NULL,'XREF',0,1,1,'MSU/TIGR Locus','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50150,'TIGR_LOCUS_MODEL',NULL,'XREF',0,1,0,'MSU/TIGR Locus (Model)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50160,'TAIR_LOCUS',NULL,'XREF',1,0,8,'TAIR Locus','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50170,'TAIR_LOCUS_MODEL',NULL,'XREF',1,0,8,'TAIR Locus (Model)','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50180,'TIGR_GeneIndex',NULL,'XREF',1,0,0,'Gene Index','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50185,'TO',NULL,'XREF',1,0,0,'Plant Trait Ontology','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50190,'PO',NULL,'XREF',1,0,0,'Plant Structure Ontology','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50195,'PO_to_gene',NULL,'XREF',1,0,0,'Plant Structure Ontology','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50196,'GO_to_gene',NULL,'XREF',1,0,0,'Gene Ontology','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50200,'GRO',NULL,'XREF',1,0,0,'Plant Growth Stage','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50510,'AFFY_RICE',NULL,'XREF',1,0,1,'Affymx GeneChip Rice','ARRAY',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50520,'AFFY_ATH1',NULL,'XREF',1,0,1,'Affymx GeneChip ATH1','ARRAY',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50530,'AFFY_Vitis_Vinifera',NULL,'XREF',1,0,1,'Affymx GeneChip Vitis vinifera','ARRAY',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50540,'AFFY_Poplar',NULL,'XREF',1,0,1,'Affymx GeneChip Poplar','ARRAY',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50541,'LRG',NULL,'KNOWN',1,0,10,'Locus Reference Genomic','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50542,'ENS_LRG_gene',NULL,'KNOWN',1,0,10,'LRG display in Ensembl','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50543,'ENS_LRG_transcript',NULL,'KNOWN',1,0,10,'LRG display in Ensembl','MISC',NULL,NULL,NULL);
+INSERT INTO `master_external_db` VALUES (50600,'IKMCs_KOs',NULL,'XREF',1,0,10,'International Knockout Mouse Consortium Knockouts','MISC',NULL,NULL,'Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse');
+INSERT INTO `master_external_db` VALUES (50601,'IKMCs_ES_cells_available',NULL,'XREF',1,0,10,'International Knockout Mouse Consortium Knockouts (ES cells available)','MISC',NULL,NULL,'Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (ES cells available)');
+INSERT INTO `master_external_db` VALUES (50602,'IKMCs_Mice_available',NULL,'XREF',1,0,10,'International Knockout Mouse Consortium Knockouts (Mice available)','MISC',NULL,NULL,'Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (Mice available)');
+INSERT INTO `master_external_db` VALUES (50603,'IKMCs_No_products_available_yet',NULL,'XREF',1,0,10,'International Knockout Mouse Consortium Knockouts (No products available yet)','MISC',NULL,NULL,'Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (No products available yet)');
+INSERT INTO `master_external_db` VALUES (50604,'IKMCs_Vector_available',NULL,'XREF',1,0,10,'International Knockout Mouse Consortium Knockouts (Vector available)','MISC',NULL,NULL,'Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (Vector available)');
+
+--
+-- Table structure for table `master_misc_set`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `master_misc_set` (
+ `misc_set_id` smallint(5) unsigned NOT NULL,
+ `code` varchar(25) NOT NULL DEFAULT '',
+ `name` varchar(255) NOT NULL DEFAULT '',
+ `description` text NOT NULL,
+ `max_length` int(10) unsigned NOT NULL,
+ PRIMARY KEY (`misc_set_id`),
+ UNIQUE KEY `code_idx` (`code`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `master_misc_set`
+--
+-- ORDER BY: `misc_set_id`
+
+INSERT INTO `master_misc_set` VALUES (1,'encode','Encode regions','Regions that were examined in the <a rel=\"external\" href=\"http://www.genome.gov/10005107\">Encode</a> pilot project.',1877426);
+INSERT INTO `master_misc_set` VALUES (2,'genomicctg','Genomic contigs','The largest contigs constructed by the Genome Reference Consortium, <a rel=\"external\" href=\"http://genomereference.org\">GRC</a>, for this genomic assembly.',100530253);
+INSERT INTO `master_misc_set` VALUES (3,'tilepath','Tilepath','BAC clones upon which the current genomic assembly was based. Colours indicate a finished sequence (gold clones), phase 1 sequencing (dark pink), phase 0 (light pink) or other (grey). Clones that have been fluorescence in situ hybridisation (FISH) mapped are marked with a black triangle in the top left corner. If a clone is shown in outline, the mapping to the genome is problematic and the true length may not be displayed.',415268);
+INSERT INTO `master_misc_set` VALUES (4,'cloneset_1mb','1Mb clone set','Clones were selected at approximately 1MB intervals in the genome to help identify breakpoints of chromosomal rearrangements. Fluorescence in situ hybridisation (FISH) mapped clones are marked by a black triangle in the upper left corner. Gold clones are also in the tilepath.',287873);
+INSERT INTO `master_misc_set` VALUES (5,'cloneset_32k','32k clone set','Clones were re-arrayed by and available at <a rel=\"external\" href=\"http://bacpac.chori.org/pHumanMinSet.htm\">CHORI</a>. Fluorescence in situ hybridisation (FISH) mapped clones are marked by a black triangle in the upper left corner. Gold clones are also in the tilepath.',299090);
+INSERT INTO `master_misc_set` VALUES (6,'cloneset_30k','30k clone set','Clone positions were determined by a Wellcome Trust Sanger Institute <a rel=\"external\" href=\"https://decipher.sanger.ac.uk/perl/application?action=arraytypes;array_id=20\">internal project</a>.',344400);
+INSERT INTO `master_misc_set` VALUES (9,'encode_excluded','Encode Duke excluded regions','Genomic regions that have been problematic for short sequence tag signal detection (such as satellites and rRNA genes). These regions were generated at Duke University\'s <a rel=\"external\" href=\"http://www.genome.duke.edu/index.php\">Institute for Genome Sciences & Policy (IGSP)</a> and <a rel=\"external\" href=\"http://www.ebi.ac.uk/\">European Bioinformatics Insitute (EBI)</a>.',160601);
+INSERT INTO `master_misc_set` VALUES (10,'bac_map','BAC map','Full list of mapped BAC clones',500000);
+INSERT INTO `master_misc_set` VALUES (11,'ASSEMBLY','WGS/Clones assembly','The tiling path of clones and WGS contigs',1000000);
+
+--
+-- Table structure for table `master_unmapped_reason`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `master_unmapped_reason` (
+ `unmapped_reason_id` smallint(5) unsigned NOT NULL,
+ `summary_description` varchar(255) DEFAULT NULL,
+ `full_description` varchar(255) DEFAULT NULL,
+ PRIMARY KEY (`unmapped_reason_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `master_unmapped_reason`
+--
+-- ORDER BY: `unmapped_reason_id`
+
+INSERT INTO `master_unmapped_reason` VALUES (1,'Marker matches multiple times','Marker aligns to the genome > 3 times');
+INSERT INTO `master_unmapped_reason` VALUES (2,'Marker does not align','Unable to align to the genome');
+INSERT INTO `master_unmapped_reason` VALUES (3,'Failed to find Stable ID','Stable ID that this xref was linked to no longer exists');
+INSERT INTO `master_unmapped_reason` VALUES (4,'No mapping done','No mapping done for this type of xref');
+INSERT INTO `master_unmapped_reason` VALUES (5,'Failed to match','Unable to match to any ensembl entity at all');
+INSERT INTO `master_unmapped_reason` VALUES (6,'Failed to match at thresholds','Unable to match at the thresholds of 90% for the query or 90% for the target');
+INSERT INTO `master_unmapped_reason` VALUES (7,'No Master','The dependent xref was not matched due to there being no master xref');
+INSERT INTO `master_unmapped_reason` VALUES (8,'Master failed','The dependent xref was not matched due to the master xref not being mapped');
+INSERT INTO `master_unmapped_reason` VALUES (40,'Was not best match','Did not top best transcript match score (0.75)');
+INSERT INTO `master_unmapped_reason` VALUES (41,'Was not best match','Did not top best transcript match score (0.76)');
+INSERT INTO `master_unmapped_reason` VALUES (42,'Was not best match','Did not top best transcript match score (0.77)');
+INSERT INTO `master_unmapped_reason` VALUES (43,'Was not best match','Did not top best transcript match score (0.78)');
+INSERT INTO `master_unmapped_reason` VALUES (44,'Was not best match','Did not top best transcript match score (0.79)');
+INSERT INTO `master_unmapped_reason` VALUES (45,'Was not best match','Did not top best transcript match score (0.80)');
+INSERT INTO `master_unmapped_reason` VALUES (46,'Was not best match','Did not top best transcript match score (0.81)');
+INSERT INTO `master_unmapped_reason` VALUES (47,'Was not best match','Did not top best transcript match score (0.82)');
+INSERT INTO `master_unmapped_reason` VALUES (48,'Was not best match','Did not top best transcript match score (0.83)');
+INSERT INTO `master_unmapped_reason` VALUES (49,'Was not best match','Did not top best transcript match score (0.84)');
+INSERT INTO `master_unmapped_reason` VALUES (50,'Was not best match','Did not top best transcript match score (0.85)');
+INSERT INTO `master_unmapped_reason` VALUES (51,'Was not best match','Did not top best transcript match score (0.86)');
+INSERT INTO `master_unmapped_reason` VALUES (52,'Was not best match','Did not top best transcript match score (0.87)');
+INSERT INTO `master_unmapped_reason` VALUES (53,'Was not best match','Did not top best transcript match score (0.88)');
+INSERT INTO `master_unmapped_reason` VALUES (54,'Was not best match','Did not top best transcript match score (0.89)');
+INSERT INTO `master_unmapped_reason` VALUES (55,'Was not best match','Did not top best transcript match score (0.90)');
+INSERT INTO `master_unmapped_reason` VALUES (56,'Was not best match','Did not top best transcript match score (0.91)');
+INSERT INTO `master_unmapped_reason` VALUES (57,'Was not best match','Did not top best transcript match score (0.92)');
+INSERT INTO `master_unmapped_reason` VALUES (58,'Was not best match','Did not top best transcript match score (0.93)');
+INSERT INTO `master_unmapped_reason` VALUES (59,'Was not best match','Did not top best transcript match score (0.94)');
+INSERT INTO `master_unmapped_reason` VALUES (60,'Was not best match','Did not top best transcript match score (0.95)');
+INSERT INTO `master_unmapped_reason` VALUES (61,'Was not best match','Did not top best transcript match score (0.96)');
+INSERT INTO `master_unmapped_reason` VALUES (62,'Was not best match','Did not top best transcript match score (0.97)');
+INSERT INTO `master_unmapped_reason` VALUES (63,'Was not best match','Did not top best transcript match score (0.98)');
+INSERT INTO `master_unmapped_reason` VALUES (64,'Was not best match','Did not top best transcript match score (0.99)');
+INSERT INTO `master_unmapped_reason` VALUES (65,'Was not best match','Did not top best transcript match score (1.00)');
+INSERT INTO `master_unmapped_reason` VALUES (66,'Did not meet threshold','Match score for transcript lower than threshold (0.75)');
+INSERT INTO `master_unmapped_reason` VALUES (67,'No overlap','No coordinate overlap with any Ensembl transcript');
+INSERT INTO `master_unmapped_reason` VALUES (96,'Failed to match at thresholds','Unable to match at the thresholds of 100% for the query or 100% for the target');
+INSERT INTO `master_unmapped_reason` VALUES (125,'Failed to match at thresholds','Unable to match at the thresholds of 55% for the query or 55% for the target');
+INSERT INTO `master_unmapped_reason` VALUES (126,'>10% N-strings','More than 10% of the sequence consists of strings of Ns. Sequences are not rejected for this reason but this may explain a low coverage hit');
+INSERT INTO `master_unmapped_reason` VALUES (127,'All long introns','Every intron in these hits is of length 250000-400000bp, we require at least one intron to be shorter than 250000bp');
+INSERT INTO `master_unmapped_reason` VALUES (128,'GSS sequence','This cDNA has been excluded from the analysis because it is in the GSS (Genome Survey Sequence) division of GenBank');
+INSERT INTO `master_unmapped_reason` VALUES (129,'Low coverage','Coverage of the best alignment is less than 90% - see query_score for coverage');
+INSERT INTO `master_unmapped_reason` VALUES (130,'Low coverage with long intron','Hits containing introns longer than 250000bp are rejected if coverage is less than 98% - see query_score for coverage');
+INSERT INTO `master_unmapped_reason` VALUES (131,'Low percent_id with long intron','Hits containing introns longer than 250000bp are rejected if percentage identity is less than 98% - see query_score for percent_id');
+INSERT INTO `master_unmapped_reason` VALUES (132,'Low percent_id','Percentage identity of the best alignment is less than 97% - see query_score for percent_id');
+INSERT INTO `master_unmapped_reason` VALUES (133,'No output from Exonerate','Exonerate returned no hits using standard parameters plus options --maxintron 400000 and --softmasktarget FALSE');
+INSERT INTO `master_unmapped_reason` VALUES (134,'Parent xref failed to match','Unable to match as parent xref was not mapped');
+INSERT INTO `master_unmapped_reason` VALUES (135,'Processed pseudogene','Rejected as a processed pseudogene because there are multiple-exon hits with the same coverage which have been rejected for other reasons');
+INSERT INTO `master_unmapped_reason` VALUES (136,'See kill-list database','This sequence has been excluded from the analysis - see the kill-list database for further details');
+INSERT INTO `master_unmapped_reason` VALUES (137,'Failed to match at thresholds','Unable to match at the thresholds of 99% for the query or 99% for the target');
+INSERT INTO `master_unmapped_reason` VALUES (138,'Marker matches multiple times','Marker aligns to the genome > 5 times');
+
+--
+-- Table structure for table `meta_key`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `meta_key` (
+ `meta_key_id` int(10) unsigned NOT NULL,
+ `name` varchar(64) NOT NULL,
+ `is_optional` tinyint(1) NOT NULL DEFAULT '0',
+ `is_current` tinyint(1) NOT NULL DEFAULT '1',
+ `db_type` set('cdna','core','funcgen','otherfeatures','variation','vega') NOT NULL DEFAULT 'core',
+ `only_for_species` text,
+ `description` text,
+ PRIMARY KEY (`meta_key_id`),
+ KEY `name_type_idx` (`name`,`db_type`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `meta_key`
+--
+-- ORDER BY: `meta_key_id`
+
+INSERT INTO `meta_key` VALUES (1,'1',0,0,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (2,'2007-11-Ensembl',0,0,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (3,'assembly.accession',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (4,'assembly.coverage_depth',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (5,'assembly.date',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (6,'assembly.default',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (7,'assembly.long_name',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (8,'assembly.mapping',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (9,'assembly.name',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (10,'assembly.ncbi_build',0,1,'cdna,core,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (11,'assembly.num_toplevel_seqs',0,0,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (12,'assembly.overlapping_regions',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (13,'assembly.prefix',0,1,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (14,'assembly.version',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (15,'date.copied_from_ens-staging',0,0,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (16,'dna_align_featurebuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (17,'exonbuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (18,'genebuild.id',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (19,'genebuild.initial_release_date',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (20,'genebuild.last_geneset_update',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (21,'genebuild.last_otherfeatures_update',0,1,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (22,'genebuild.last_update',0,1,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (23,'genebuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (24,'genebuild.method',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (25,'genebuild.start_date',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (26,'genebuild.version',0,1,'core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (27,'genebuild_id',0,1,'cdna',NULL,NULL);
+INSERT INTO `meta_key` VALUES (28,'individual.default_strain',0,1,'variation',NULL,NULL);
+INSERT INTO `meta_key` VALUES (29,'individual.display_strain',0,1,'variation',NULL,NULL);
+INSERT INTO `meta_key` VALUES (30,'individual.reference_strain',0,1,'variation',NULL,NULL);
+INSERT INTO `meta_key` VALUES (31,'liftover.mapping',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (32,'marker.priority',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (33,'pairwise_ld.default_population',0,1,'variation',NULL,NULL);
+INSERT INTO `meta_key` VALUES (34,'patch',0,1,'cdna,core,funcgen,otherfeatures,variation,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (35,'pipeline.lock',0,0,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (36,'prediction_exonbuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (37,'prediction_transcriptbuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (38,'protein_align_featurebuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (39,'provider.name',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (40,'provider.url',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (41,'read_coverage.coverage_level',0,1,'variation',NULL,NULL);
+INSERT INTO `meta_key` VALUES (42,'regbuild.feature_set_ids',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (43,'regbuild.feature_set_ids_v4',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (44,'regbuild.feature_set_ids_v5',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (45,'regbuild.feature_type_ids',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (46,'regbuild.feature_type_ids_v4',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (47,'regbuild.feature_type_ids_v5',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (48,'regbuild.focus_feature_set_ids',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (49,'regbuild.initial_release_date',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (50,'regbuild.last_annotation_update',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (51,'regbuild.version',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (52,'repeat.analysis',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (53,'repeat_featurebuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (54,'sample.gene_param',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (55,'sample.gene_text',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (56,'sample.location_param',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (57,'sample.location_text',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (58,'sample.search_text',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (59,'sample.transcript_param',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (60,'sample.transcript_text',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (61,'schema_version',0,1,'cdna,core,funcgen,otherfeatures,variation,vega',NULL,'The version of the schema in this database.');
+INSERT INTO `meta_key` VALUES (62,'simple_featurebuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (63,'species.alias',0,1,'cdna,core,otherfeatures,vega',NULL,'An alias for the species name, will be read by the Registry and may be used when getting adaptors using $registry->get_adpator(...)');
+INSERT INTO `meta_key` VALUES (64,'species.classification',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (65,'species.common_name',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (66,'species.description',0,1,'core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (67,'species.ensembl_alias_name',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (68,'species.ensembl_common_name',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (69,'species.stable_id_prefix',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (70,'species.system_name',0,1,'funcgen',NULL,NULL);
+INSERT INTO `meta_key` VALUES (71,'species.taxonomy_id',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (72,'species.three_letter_code',0,0,'otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (73,'transcriptbuild.level',0,1,'cdna,core,otherfeatures,vega',NULL,NULL);
+INSERT INTO `meta_key` VALUES (74,'xref.timestamp',0,1,'cdna,core,otherfeatures',NULL,NULL);
+INSERT INTO `meta_key` VALUES (75,'species.production_name',0,1,'core,otherfeatures',NULL,'The name of the species in a form suitable for use in, e.g., database table names or file names.');
+INSERT INTO `meta_key` VALUES (76,'schema_type',0,1,'cdna,core,funcgen,otherfeatures,variation,vega',NULL,'The type of schema in this database, e.g., \'core\' in a Core database or \'variation\' in a Variation database.');
+INSERT INTO `meta_key` VALUES (77,'genebuild.vega_merge_db',0,1,'core','homo_sapiens,mus_musculus','Database name for Vega database used for GENCODE gene merge');
+INSERT INTO `meta_key` VALUES (78,'genebuild.projection_source_db',0,1,'core','callithrix_jacchus,choloepus_hoffmanni,dasypus_novemcinctus,dipodomys_ordii,echinops_telfairi,erinaceus_europaeus,felis_catus,gorilla_gorilla,macaca_mulatta,macropus_eugenii,microcebus_murinus,myotis_lucifugus,ochotona_princeps,otolemur_garnettii,pan_troglodytes,pongo_pygmaeus,procavia_capensis,pteropus_vampyrus,sorex_araneus,spermophilus_tridecemlineatus,tarsius_syrichta,tupaia_belangeri,tursiops_truncatus,vicugna_pacos','Database name for Reference database used for the low_coverage projection build. The reference database is usually human.');
+INSERT INTO `meta_key` VALUES (79,'species.scientific_name',0,1,'core,otherfeatures',NULL,'The full name of the species, e.g., \'Homo sapiens\'');
+INSERT INTO `meta_key` VALUES (80,'species.short_name',0,1,'core,otherfeatures',NULL,'A name which is short enough to be used in space constraint areas');
+INSERT INTO `meta_key` VALUES (81,'genebuild.havana_datafreeze_date',0,1,'core','homo_sapiens,mus_musculus,danio_rerio','Date of Havana annotation data freeze');
+
+--
+-- Table structure for table `species`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `species` (
+ `species_id` int(10) unsigned NOT NULL,
+ `db_name` varchar(32) NOT NULL,
+ `common_name` varchar(32) NOT NULL,
+ `web_name` varchar(32) NOT NULL,
+ `is_current` tinyint(1) NOT NULL DEFAULT '1',
+ PRIMARY KEY (`species_id`),
+ UNIQUE KEY `db_name_idx` (`db_name`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `species`
+--
+-- ORDER BY: `species_id`
+
+INSERT INTO `species` VALUES (1,'anolis_carolinensis','green anole','Anole lizard',1);
+INSERT INTO `species` VALUES (2,'bos_taurus','cattle','Cow',1);
+INSERT INTO `species` VALUES (3,'caenorhabditis_elegans','C.elegans','C.elegans',1);
+INSERT INTO `species` VALUES (4,'callithrix_jacchus','white-tufted-ear marmoset','Marmoset',1);
+INSERT INTO `species` VALUES (5,'canis_familiaris','dog','Dog',1);
+INSERT INTO `species` VALUES (6,'cavia_porcellus','domestic guinea pig','Guinea Pig',1);
+INSERT INTO `species` VALUES (7,'choloepus_hoffmanni','Hoffmann\'s two-fingered sloth','Sloth',1);
+INSERT INTO `species` VALUES (8,'ciona_intestinalis','Sea squirt Ciona intestinalis','C.intestinalis',1);
+INSERT INTO `species` VALUES (9,'ciona_savignyi','Sea squirt Ciona savignyi','C.savignyi',1);
+INSERT INTO `species` VALUES (10,'danio_rerio','zebrafish','Zebrafish',1);
+INSERT INTO `species` VALUES (11,'dasypus_novemcinctus','nine-banded armadillo','Armadillo',1);
+INSERT INTO `species` VALUES (12,'dipodomys_ordii','Ord\'s kangaroo rat','Kangaroo rat',1);
+INSERT INTO `species` VALUES (13,'drosophila_melanogaster','fruit fly','Fly',1);
+INSERT INTO `species` VALUES (14,'echinops_telfairi','small Madagascar hedgehog','Tenrec',1);
+INSERT INTO `species` VALUES (15,'equus_caballus','horse','Horse',1);
+INSERT INTO `species` VALUES (16,'erinaceus_europaeus','western European hedgehog','Hedgehog',1);
+INSERT INTO `species` VALUES (17,'felis_catus','domestic cat','Cat',1);
+INSERT INTO `species` VALUES (18,'gallus_gallus','chicken','Chicken',1);
+INSERT INTO `species` VALUES (19,'gasterosteus_aculeatus','three-spined stickleback','Stickleback',1);
+INSERT INTO `species` VALUES (20,'gorilla_gorilla','Western Gorilla','Gorilla',1);
+INSERT INTO `species` VALUES (21,'homo_sapiens','human','Human',1);
+INSERT INTO `species` VALUES (22,'loxodonta_africana','African savanna elephant','Elephant',1);
+INSERT INTO `species` VALUES (23,'macaca_mulatta','rhesus monkey','Macaque',1);
+INSERT INTO `species` VALUES (24,'macropus_eugenii','tammar wallaby','Wallaby',1);
+INSERT INTO `species` VALUES (25,'microcebus_murinus','gray mouse lemur','Mouse Lemur',1);
+INSERT INTO `species` VALUES (26,'monodelphis_domestica','gray short-tailed opossum','Opossum',1);
+INSERT INTO `species` VALUES (27,'mus_musculus','house mouse','Mouse',1);
+INSERT INTO `species` VALUES (28,'myotis_lucifugus','little brown bat','Microbat',1);
+INSERT INTO `species` VALUES (29,'ochotona_princeps','American pika','Pika',1);
+INSERT INTO `species` VALUES (30,'ornithorhynchus_anatinus','platypus','Platypus',1);
+INSERT INTO `species` VALUES (31,'oryctolagus_cuniculus','rabbit','Rabbit',1);
+INSERT INTO `species` VALUES (32,'oryzias_latipes','Japanese medaka','Medaka',1);
+INSERT INTO `species` VALUES (33,'otolemur_garnettii','small-eared galago','Bushbaby',1);
+INSERT INTO `species` VALUES (34,'pan_troglodytes','chimpanzee','Chimp',1);
+INSERT INTO `species` VALUES (35,'pongo_pygmaeus','Bornean orangutan','Orangutan',1);
+INSERT INTO `species` VALUES (36,'procavia_capensis','cape rock hyrax','Rock Hyrax',1);
+INSERT INTO `species` VALUES (37,'pteropus_vampyrus','large flying fox','Megabat',1);
+INSERT INTO `species` VALUES (38,'rattus_norvegicus','Norway rat','Rat',1);
+INSERT INTO `species` VALUES (39,'saccharomyces_cerevisiae','baker\'s yeast','Yeast',1);
+INSERT INTO `species` VALUES (40,'sorex_araneus','European shrew','Shrew',1);
+INSERT INTO `species` VALUES (41,'spermophilus_tridecemlineatus','thirteen-lined ground squirrel','Ground Squirrel',1);
+INSERT INTO `species` VALUES (42,'sus_scrofa','pig','Pig',1);
+INSERT INTO `species` VALUES (43,'taeniopygia_guttata','zebra finch','Zebra Finch',1);
+INSERT INTO `species` VALUES (44,'takifugu_rubripes','torafugu','Fugu',1);
+INSERT INTO `species` VALUES (45,'tarsius_syrichta','Philippine tarsier','Tarsier',1);
+INSERT INTO `species` VALUES (46,'tetraodon_nigroviridis','spotted green pufferfish','Tetraodon',1);
+INSERT INTO `species` VALUES (47,'tupaia_belangeri','northern tree shrew','Tree Shrew',1);
+INSERT INTO `species` VALUES (48,'tursiops_truncatus','bottlenosed dolphin','Dolphin',1);
+INSERT INTO `species` VALUES (49,'vicugna_pacos','alpaca','Alpaca',1);
+INSERT INTO `species` VALUES (50,'xenopus_tropicalis','western clawed frog','Xenopus',1);
+INSERT INTO `species` VALUES (51,'ailuropoda_melanoleuca','giant panda','Panda',1);
+INSERT INTO `species` VALUES (52,'meleagris_gallopavo','domestic turkey','Turkey',1);
+
+--
+-- Table structure for table `web_data`
+--
+
+SET @saved_cs_client = @@character_set_client;
+SET character_set_client = utf8;
+CREATE TABLE `web_data` (
+ `web_data_id` int(10) unsigned NOT NULL,
+ `hash_key` varchar(32) NOT NULL,
+ `hash_value` varchar(128) DEFAULT NULL,
+ PRIMARY KEY (`web_data_id`)
+);
+SET character_set_client = @saved_cs_client;
+
+--
+-- Dumping data for table `web_data`
+--
+-- ORDER BY: `web_data_id`
+
+/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */;
+
+/*!40101 SET SQL_MODE=@OLD_SQL_MODE */;
+/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */;
+/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */;
+/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
+
+-- Dump completed on 2010-11-16 16:15:24