From 7084203d3e1499a48da830589f9a41542a4f254f Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 5 Jun 2007 12:15:28 +0000
Subject: [PATCH] added NOTE about fetching by primary accession not being
bothered about what the external database is
---
modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
index bd16debacd..25f476acd7 100644
--- a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
@@ -101,6 +101,7 @@ sub fetch_by_dbID {
-info_text => $info_text,
-type => $type);
+
$exDB->description( $desc ) if ( $desc );
}
@@ -817,7 +818,8 @@ SSQL
Example : @gene_ids = $dbea->list_gene_ids_by_external_db_id(1020);
Description: Retrieve a list of geneid by an external identifier that is
linked to any of the genes transcripts, translations or the
- gene itself
+ gene itself. NOTE: if more than one external identifier has the
+ same primary accession then genes for each of these is returned.
Returntype : list of ints
Exceptions : none
Caller : unknown
--
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