From 70cdc8dd8f056df798869e6d0be2b4879ecca840 Mon Sep 17 00:00:00 2001
From: Gautier Koscielny <gk4@sanger.ac.uk>
Date: Mon, 10 Oct 2011 11:03:57 +0000
Subject: [PATCH] CPPFLAGS added (extra flags for includes)

---
 .../alternative_splicing/AltSplicingToolkit/src/Makefile.am     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/misc-scripts/alternative_splicing/AltSplicingToolkit/src/Makefile.am b/misc-scripts/alternative_splicing/AltSplicingToolkit/src/Makefile.am
index f5176be84a..7b8a00d6c8 100644
--- a/misc-scripts/alternative_splicing/AltSplicingToolkit/src/Makefile.am
+++ b/misc-scripts/alternative_splicing/AltSplicingToolkit/src/Makefile.am
@@ -5,7 +5,7 @@ bin_CPPFLAGS = -L@top_srcdir@/src
 LDADD = -lAltSplicing -lm
 
 altSpliceFinder_SOURCES = Main.cpp Constants.h
-altSpliceFinder_CPPFLAGS = -L@top_srcdir@/src
+altSpliceFinder_CPPFLAGS = @CPPFLAGS@ -L@top_srcdir@/src
 
 # general use to compile individuals objects
 AM_CPPFLAGS = -I@top_srcdir@/src -L@top_srcdir@/src
-- 
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