From 76999895edff23b8962b4bdff2925448bd258e3a Mon Sep 17 00:00:00 2001
From: Nathan Johnson <njohnson@ebi.ac.uk>
Date: Fri, 16 Jan 2009 11:16:03 +0000
Subject: [PATCH] fixed unmapped object delete
---
misc-scripts/probe_mapping/probe2transcript.pl | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/probe_mapping/probe2transcript.pl b/misc-scripts/probe_mapping/probe2transcript.pl
index 3f1df40163..6005186675 100644
--- a/misc-scripts/probe_mapping/probe2transcript.pl
+++ b/misc-scripts/probe_mapping/probe2transcript.pl
@@ -911,7 +911,9 @@ sub delete_existing_xrefs {
#We can now do this for arrays as we store the identifier either as 'op.probeset' or 'op.probeset:op.oligo_probe_id'
if(@arrays){
#Don't delete ur as this may be used for other probe2transcript stuff
- $sql = 'DELETE uo FROM analysis a, unmapped_reason ur, unmapped_object uo, oligo_array oa, oligo_probe op WHERE a.logic_name ="probe2transcript" AND a.analysis_id=uo.analysis_id AND uo.unmapped_reason_id=ur.unmapped_reason_id and oa.name in ('.join('", "', values %array_name_cache).') and oa.oligo_array_id=op.oligo_array_id and (uo.identifier=op.probeset OR uo.indentifier=concat(op.probeset, ":", op.oligo_probe_id)';
+ $sql = 'DELETE uo FROM analysis a, unmapped_reason ur, unmapped_object uo, oligo_array oa, oligo_probe op WHERE a.logic_name ="probe2transcript" AND a.analysis_id=uo.analysis_id AND uo.unmapped_reason_id=ur.unmapped_reason_id and oa.name in ("'.join('", "', values %array_name_cache).'") and oa.oligo_array_id=op.oligo_array_id and (uo.identifier=op.probeset OR uo.identifier=concat(op.probeset, ":", op.oligo_probe_id))';
+
+ warn $sql;
}
else{
--
GitLab