From 78795eefc364a07bd48dcad3aea0461584f373eb Mon Sep 17 00:00:00 2001
From: Rhoda Kinsella <rhoda@ebi.ac.uk>
Date: Tue, 29 Jul 2008 12:12:08 +0000
Subject: [PATCH] Swap accession and label data in xref table and leave
linkage_xref column blank for direct_xref table
---
misc-scripts/xref_mapping/XrefParser/HPAParser.pm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/HPAParser.pm b/misc-scripts/xref_mapping/XrefParser/HPAParser.pm
index 4e6f53bb77..38465320ea 100644
--- a/misc-scripts/xref_mapping/XrefParser/HPAParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/HPAParser.pm
@@ -54,21 +54,21 @@ sub run {
return 1;
}
- my $label = $antibody_id;
+ my $label = $antibody;
my $type = 'translation';
my $description = '';
my $version = '1';
++$parsed_count;
- my $xref_id = XrefParser::BaseParser->get_xref( $antibody, $source_id );
+ my $xref_id = XrefParser::BaseParser->get_xref( $antibody_id, $source_id );
if ( !defined($xref_id) || $xref_id eq '' ) {
- $xref_id = XrefParser::BaseParser->add_xref($antibody, $version, $label, $description, $source_id, $species_id);
+ $xref_id = XrefParser::BaseParser->add_xref($antibody_id, $version, $label, $description, $source_id, $species_id);
}
- XrefParser::BaseParser->add_direct_xref( $xref_id, $ensembl_peptide_id, $type, $antibody);
+ XrefParser::BaseParser->add_direct_xref( $xref_id, $ensembl_peptide_id, $type, '');
} ## end while ( defined( my $line...
--
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