From 7919b913826b24c02058bae89c6b04529a976972 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 16 Mar 2010 13:33:12 +0000
Subject: [PATCH] Fix for split_Slices seq_region_lenght should be for the
whole seq region not just for the slice
---
modules/Bio/EnsEMBL/Utils/Slice.pm | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Utils/Slice.pm b/modules/Bio/EnsEMBL/Utils/Slice.pm
index c2b96718ff..10356fdadb 100644
--- a/modules/Bio/EnsEMBL/Utils/Slice.pm
+++ b/modules/Bio/EnsEMBL/Utils/Slice.pm
@@ -117,13 +117,12 @@ sub split_Slices{
#any remainder gets added to the last slice of the seq_region
$end = $slice->end if($i == $number-1);
-
push @out, Bio::EnsEMBL::Slice->new
(-START => $start,
-END => $end,
-STRAND => 1,
-SEQ_REGION_NAME => $slice->seq_region_name,
- -SEQ_REGION_LENGTH => $length,
+ -SEQ_REGION_LENGTH => $slice->seq_region_length,
-COORD_SYSTEM => $slice->coord_system,
-ADAPTOR => $slice->adaptor);
$start += $multiple + 1;
--
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