diff --git a/misc-scripts/xref_mapping/xrefs_overview.txt b/misc-scripts/xref_mapping/xrefs_overview.txt index 9e6efd96dfcc4903b23456ae3e6f5f764253f639..fc74be342f29391e781f1c7ab0a1c888b5b429f5 100644 --- a/misc-scripts/xref_mapping/xrefs_overview.txt +++ b/misc-scripts/xref_mapping/xrefs_overview.txt @@ -126,8 +126,8 @@ Once all the mapping have been stored the display Xrefs and the descriptions are generated for the transcripts and genes. If you want to change any of the default settings you can create a new -'<species>.pm' for your particular species and override the script -'BasicMapper.pm' (see 'rattus_norvegicus.pm' as an example). +'<species>.pm' for your particular species, or '<taxon>.pm' and override +the script 'BasicMapper.pm' (see 'rattus_norvegicus.pm' as an example). The 'xref_mapper.pl' script needs a configuration file which has information on the Xref database and the core database and also the @@ -148,6 +148,7 @@ password=xxxx dir=./xref species=homo_sapiens +taxon=mammalia (this is optional - use taxon if you need more than one species to use the same '<taxon>.pm' module) host=ensembl-machine port=3306 dbname=homo_sapiens_core_42_36d