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Commit 7cba7005 authored by Anja Thormann's avatar Anja Thormann
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Remove AUTO_INCREMENTs

parent fd5b65de
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Showing with 24 additions and 24 deletions
modules/t/test-genome-DBs/homo_sapiens/variation/table.sql
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......@@ -11,14 +11,14 @@ CREATE TABLE `allele` (
KEY `variation_idx` (`variation_id`),
KEY `subsnp_idx` (`subsnp_id`),
KEY `population_idx` (`population_id`)
) ENGINE=MyISAM AUTO_INCREMENT=615872647 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `allele_code` (
`allele_code_id` int(11) NOT NULL AUTO_INCREMENT,
`allele` varchar(60000) DEFAULT NULL,
`allele` varchar(255) DEFAULT NULL,
PRIMARY KEY (`allele_code_id`),
UNIQUE KEY `allele_idx` (`allele`(1000))
) ENGINE=MyISAM AUTO_INCREMENT=188 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `associate_study` (
`study1_id` int(10) unsigned NOT NULL,
......@@ -119,7 +119,7 @@ CREATE TABLE `failed_variation` (
`failed_description_id` int(10) unsigned NOT NULL,
PRIMARY KEY (`failed_variation_id`),
UNIQUE KEY `variation_idx` (`variation_id`,`failed_description_id`)
) ENGINE=MyISAM AUTO_INCREMENT=1231500 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `genotype_code` (
`genotype_code_id` int(11) unsigned NOT NULL,
......@@ -141,7 +141,7 @@ CREATE TABLE `individual` (
PRIMARY KEY (`individual_id`),
KEY `father_individual_idx` (`father_individual_id`),
KEY `mother_individual_idx` (`mother_individual_id`)
) ENGINE=MyISAM AUTO_INCREMENT=102080 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `individual_synonym` (
`synonym_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -158,7 +158,7 @@ CREATE TABLE `individual_type` (
`name` varchar(255) NOT NULL,
`description` text,
PRIMARY KEY (`individual_type_id`)
) ENGINE=MyISAM AUTO_INCREMENT=5 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `meta` (
`meta_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -168,7 +168,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=76 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
......@@ -246,7 +246,7 @@ CREATE TABLE `population` (
`display_group_id` tinyint(1) DEFAULT NULL,
PRIMARY KEY (`population_id`),
KEY `name_idx` (`name`)
) ENGINE=MyISAM AUTO_INCREMENT=171947 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `population_genotype` (
`population_genotype_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -260,7 +260,7 @@ CREATE TABLE `population_genotype` (
KEY `population_idx` (`population_id`),
KEY `variation_idx` (`variation_id`),
KEY `subsnp_idx` (`subsnp_id`)
) ENGINE=MyISAM AUTO_INCREMENT=133640072 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `population_structure` (
`super_population_id` int(10) unsigned NOT NULL,
......@@ -306,7 +306,7 @@ CREATE TABLE `publication` (
PRIMARY KEY (`publication_id`),
KEY `pmid_idx` (`pmid`),
KEY `doi_idx` (`doi`)
) ENGINE=MyISAM AUTO_INCREMENT=36250 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `read_coverage` (
`seq_region_id` int(10) unsigned NOT NULL,
......@@ -342,13 +342,13 @@ CREATE TABLE `sample` (
`variation_set_id` set('1','2','3','4','5','6','7','8','9','10','11','12','13','14','15','16','17','18','19','20','21','22','23','24','25','26','27','28','29','30','31','32','33','34','35','36','37','38','39','40','41','42','43','44','45','46','47','48','49','50','51','52','53','54','55','56','57','58','59','60','61','62','63','64') DEFAULT NULL,
PRIMARY KEY (`sample_id`),
KEY `individual_idx` (`individual_id`)
) ENGINE=MyISAM AUTO_INCREMENT=102080 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `sample_genotype_multiple_bp` (
`variation_id` int(10) unsigned NOT NULL,
`subsnp_id` int(15) unsigned DEFAULT NULL,
`allele_1` varchar(25000) DEFAULT NULL,
`allele_2` varchar(25000) DEFAULT NULL,
`allele_1` varchar(255) DEFAULT NULL,
`allele_2` varchar(255) DEFAULT NULL,
`sample_id` int(10) unsigned DEFAULT NULL,
KEY `variation_idx` (`variation_id`),
KEY `subsnp_idx` (`subsnp_id`),
......@@ -381,7 +381,7 @@ CREATE TABLE `source` (
`somatic_status` enum('germline','somatic','mixed') DEFAULT 'germline',
`data_types` set('variation','variation_synonym','structural_variation','phenotype_feature','study') DEFAULT NULL,
PRIMARY KEY (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=27 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `strain_gtype_poly` (
`variation_id` int(10) unsigned NOT NULL,
......@@ -406,7 +406,7 @@ CREATE TABLE `structural_variation` (
KEY `source_idx` (`source_id`),
KEY `study_idx` (`study_id`),
KEY `attrib_idx` (`class_attrib_id`)
) ENGINE=MyISAM AUTO_INCREMENT=18294457 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `structural_variation_association` (
`structural_variation_id` int(10) unsigned NOT NULL,
......@@ -444,7 +444,7 @@ CREATE TABLE `structural_variation_feature` (
KEY `study_idx` (`study_id`),
KEY `attrib_idx` (`class_attrib_id`),
KEY `variation_set_idx` (`variation_set_id`)
) ENGINE=MyISAM AUTO_INCREMENT=10281998 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `structural_variation_sample` (
`structural_variation_sample_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -455,7 +455,7 @@ CREATE TABLE `structural_variation_sample` (
KEY `structural_variation_idx` (`structural_variation_id`),
KEY `strain_idx` (`strain_id`),
KEY `sample_idx` (`sample_id`)
) ENGINE=MyISAM AUTO_INCREMENT=6107306 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `study` (
`study_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -467,7 +467,7 @@ CREATE TABLE `study` (
`study_type` varchar(255) DEFAULT NULL,
PRIMARY KEY (`study_id`),
KEY `source_idx` (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=4480 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `submitter_handle` (
`handle_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -507,7 +507,7 @@ CREATE TABLE `tmp_individual_genotype_single_bp` (
KEY `variation_idx` (`variation_id`),
KEY `subsnp_idx` (`subsnp_id`),
KEY `individual_idx` (`individual_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 MAX_ROWS=100000000;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `transcript_variation` (
`transcript_variation_id` int(11) unsigned NOT NULL AUTO_INCREMENT,
......@@ -537,7 +537,7 @@ CREATE TABLE `transcript_variation` (
KEY `variation_feature_idx` (`variation_feature_id`),
KEY `consequence_type_idx` (`consequence_types`),
KEY `somatic_feature_idx` (`feature_stable_id`,`somatic`)
) ENGINE=MyISAM AUTO_INCREMENT=7328586 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `translation_md5` (
`translation_md5_id` int(11) NOT NULL AUTO_INCREMENT,
......@@ -563,7 +563,7 @@ CREATE TABLE `variation` (
PRIMARY KEY (`variation_id`),
UNIQUE KEY `name` (`name`),
KEY `source_idx` (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=64119776 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `variation_attrib` (
`variation_id` int(11) unsigned NOT NULL,
......@@ -608,7 +608,7 @@ CREATE TABLE `variation_feature` (
KEY `variation_set_idx` (`variation_set_id`),
KEY `consequence_type_idx` (`consequence_types`),
KEY `source_idx` (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=69649394 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `variation_feature_bak` (
`variation_feature_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -653,7 +653,7 @@ CREATE TABLE `variation_set` (
`short_name_attrib_id` int(10) unsigned DEFAULT NULL,
PRIMARY KEY (`variation_set_id`),
KEY `name_idx` (`name`)
) ENGINE=MyISAM AUTO_INCREMENT=65 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `variation_set_structural_variation` (
`structural_variation_id` int(10) unsigned NOT NULL,
......@@ -687,5 +687,5 @@ CREATE TABLE `variation_synonym` (
KEY `variation_idx` (`variation_id`),
KEY `subsnp_idx` (`subsnp_id`),
KEY `source_idx` (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=236827121 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
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