diff --git a/misc-scripts/attribute_types/attrib_type.txt b/misc-scripts/attribute_types/attrib_type.txt index ba3fa52e0b99ec1468a29777dbc73a2935dedb71..64004f4adba361fba8b85dd748783b17fb4cd7ef 100644 --- a/misc-scripts/attribute_types/attrib_type.txt +++ b/misc-scripts/attribute_types/attrib_type.txt @@ -100,18 +100,18 @@ 31 fpc_clone_id fpc clone # additional gene counts for Vega (see GeneCount for general description) -32 NovelCDSCount protein_coding_NOVEL Total Number of Novel CDSs -33 NovelTransCount processed_transcript_NOVEL Total Number of Novel transcripts -34 PutTransCount processed_transcript_PUTATIVE Total Number of Putative transcripts -35 PredTransCount protein_coding_PREDICTED Total Number of Predicted transcripts -36 IgSegCount Ig_segment_NOVEL Total Number of Ig Segments -37 IgPsSegCount Ig_pseudogene_segment_NOVEL Total Number of Ig Pseudogene Segments -38 TotPsCount total_pseudogene_NOVEL Total Number of Pseudogenes -39 UnclassPsCount pseudogene_NOVEL Number of Unclassified pseudogenes -40 ProcPsCount processed_pseudogene_NOVEL Number of Processed pseudogenes -41 UnprocPsCount unprocessed_pseudogene_NOVEL Number of Unprocessed pseudogenes -42 KnwnprogCount protein_coding_in_progress_KNOWN Number of Known Genes in progress -43 NovCDSprogCount protein_coding_in_progress_NOVEL Number of novel CDS in progress +32 KnownPCCount protein_coding_KNOWN Number of Known Protein Coding +33 NovelPCCount protein_coding_NOVEL Number of Novel Protein Coding +34 NovelPTCount processed_transcript_NOVEL Number of Novel Processed Transcripts +35 PutPTCount processed_transcript_PUTATIVE Number of Putative Processed Transcripts +36 PredPCCount protein_coding_PREDICTED Number of Predicted Protein Coding +37 IgSegCount total_Ig_segment_ Number of Ig Segments +38 IgPsSegCount Ig_pseudogene_segment_ Number of Ig Pseudogene Segments +39 TotPsCount total_pseudogene_ Number of Pseudogenes +40 ProcPsCount processed_pseudogene_ Number of Processed pseudogenes +41 UnprocPsCount unprocessed_pseudogene_ Number of Unprocessed pseudogenes +42 KnwnPCProgCount protein_coding_in_progress_KNOWN Number of Known Protein coding genes in progress +43 NovPCProgCount protein_coding_in_progress_NOVEL Number of Novel Protein coding genes in progress # Vega annotation stats 44 AnnotSeqLength Annotated sequence length Total length of annotated clone sequence @@ -122,7 +122,6 @@ 47 ack Acknowledgement Acknowledgement # old clone attribute - 48 htg_phase High throughput phase high throughput genomic sequencing phase 49 description Description A general descriptive text attribute 50 chromosome Chromosome chromosomal location for supercontigs that are not assembled @@ -133,4 +132,5 @@ 53 author_email Author email address Author email address 54 remark Remark Annotation remark 55 transcr_class Transcript class Transcript class +56 KnownPTCount processed_transcript_KNOWN Number of Known Processed Transcripts