From 80e274e16acb13fe43c3e5f258f488c4b4df9e08 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Thu, 10 Jan 2013 16:57:31 +0000
Subject: [PATCH] fetch_all_failed_jobs method replaced by
fetch_all_by_analysis_id_status(undef,'FAILED') as first method has been
removed in hive
---
modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryCore.pm | 2 +-
modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryOtherf.pm | 2 +-
.../Bio/EnsEMBL/Pipeline/Production/EmailSummaryVariation.pm | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryCore.pm b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryCore.pm
index 0ad8fa922d..28907cdbe9 100644
--- a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryCore.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryCore.pm
@@ -126,7 +126,7 @@ sub jobs {
sub failed {
my ($self) = @_;
- my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_failed_jobs();
+ my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_by_analysis_id_status(undef, 'FAILED');
if(! @{$failed}) {
return 'No jobs failed. Congratulations!';
}
diff --git a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryOtherf.pm b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryOtherf.pm
index 2eccb651d8..d3d3564e82 100644
--- a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryOtherf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryOtherf.pm
@@ -78,7 +78,7 @@ sub jobs {
sub failed {
my ($self) = @_;
- my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_failed_jobs();
+ my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_by_analysis_id_status(undef,'FAILED');
if(! @{$failed}) {
return 'No jobs failed. Congratulations!';
}
diff --git a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryVariation.pm b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryVariation.pm
index 61462babc0..7d98d435de 100644
--- a/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryVariation.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/Production/EmailSummaryVariation.pm
@@ -83,7 +83,7 @@ sub jobs {
sub failed {
my ($self) = @_;
- my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_failed_jobs();
+ my $failed = $self->db()->get_AnalysisJobAdaptor()->fetch_all_by_analysis_id_status(undef,'FAILED');
if(! @{$failed}) {
return 'No jobs failed. Congratulations!';
}
--
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