diff --git a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/cisred.pm b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/cisred.pm index 417f8b0d7cfbd4ae7074525e9d9104ff89f8bf1e..0afebc63b48f4f3370093ae52fa6b926e4d0fedc 100644 --- a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/cisred.pm +++ b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/cisred.pm @@ -166,6 +166,8 @@ sub parse { $end = $projected_feature->end(); $strand = $projected_feature->strand(); + $feature{SEQ_REGION_ID} = $slice_adaptor->get_seq_region_id($projected_feature->feature_Slice); + #print join("\t", "NEW: ", $start, $end, $strand, $chromosome, $motif_name) . "\n"; } diff --git a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/miranda.pm b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/miranda.pm index a75909696f7a8577f4cf3d71776d7905c530184a..21c0044aacb41abfdf71865fc8d3b9c609be45b8 100644 --- a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/miranda.pm +++ b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/miranda.pm @@ -131,6 +131,8 @@ sub parse { $end = $projected_feature->end(); $strand = $projected_feature->strand(); + $feature{SEQ_REGION_ID} = $slice_adaptor->get_seq_region_id($projected_feature->feature_Slice); + #print join("\t", "NEW: ", $start, $end, $strand, $chr, $feature{NAME}) . "\n"; }