From 8354d323a7216c38cade5034dda94a7bc966f213 Mon Sep 17 00:00:00 2001
From: Kieron Taylor <ktaylor@ebi.ac.uk>
Date: Thu, 4 Feb 2016 17:26:13 +0000
Subject: [PATCH] Old xref connections should not be typed by the new master
xref. Generate type mappings for both sets explicitly.
---
.../xref_mapping/XrefMapper/ProcessPrioritys.pm | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/ProcessPrioritys.pm b/misc-scripts/xref_mapping/XrefMapper/ProcessPrioritys.pm
index 7cfb79bb85..ebcb156f6d 100644
--- a/misc-scripts/xref_mapping/XrefMapper/ProcessPrioritys.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/ProcessPrioritys.pm
@@ -277,13 +277,19 @@ sub process_dependents{
my @old_ensembl_ids = $self->_get_old_ensembl_ids_associated_with_xref($old_master_xref_id, $best_ensembl_ids);
- # determine object type of best_ensembl_ids. This will be the only type left once we've deleted the other object_xrefs
+ # determine object type of the ensembl_ids we are taking links from and connecting to.
my %splonk;
- foreach my $ens_id (@$best_ensembl_ids,@old_ensembl_ids) {
+ foreach my $ens_id (@$best_ensembl_ids) {
$get_type_sth->execute($ens_id,$new_master_xref_id);
my ($type) = $get_type_sth->fetchrow_array();
$splonk{$ens_id} = $type;
}
+ foreach my $ens_id (@old_ensembl_ids) {
+ $get_type_sth->execute($ens_id,$old_master_xref);
+ my ($type) = $get_type_sth->fetchrow_array();
+ $splonk{$ens_id} = $type;
+ }
+
## Loop through all dependent xrefs of old master xref, and recurse
while(my $xref_id = pop(@master_xrefs)){
--
GitLab