From 85ce2e7fad918ad88677196ccf9f34bd95493425 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Thu, 9 Dec 2004 10:58:52 +0000
Subject: [PATCH] Renamed dump_xrefs to dump_core_xrefs to avoid conflict with
similarly-named but differntly-functioning dump_xref
---
misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
index c0d99be7f8..6a9834eef4 100644
--- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
@@ -728,7 +728,7 @@ sub store {
my %ensembl_object_types;
# and a list of mappings of ensembl objects to xrefs
- # (primary now, dependent added in dump_xrefs)
+ # (primary now, dependent added in dump_core_xrefs)
# this is required for display_xref generation later
# format:
# key: ensembl object type:ensembl object id
@@ -805,8 +805,8 @@ sub store {
print "Read $total_lines lines from $total_files exonerate output files\n";
# write relevant xrefs to file
- print "passing object_xref_mappings to dump_xrefs with " . scalar (keys %object_xref_mappings) . "\n";
- $self->dump_xrefs(\%primary_xref_ids, $object_xref_id+1, $xref_id_offset, \%ensembl_object_types, \%object_xref_mappings);
+ print "passing object_xref_mappings to dump_core_xrefs with " . scalar (keys %object_xref_mappings) . "\n";
+ $self->dump_core_xrefs(\%primary_xref_ids, $object_xref_id+1, $xref_id_offset, \%ensembl_object_types, \%object_xref_mappings);
# write comparison info. Can be removed after development
dump_comparison();
@@ -874,7 +874,7 @@ sub get_analysis_id {
}
-sub dump_xrefs {
+sub dump_core_xrefs {
my ($self, $xref_ids_hashref, $start_object_xref_id, $xref_id_offset, $ensembl_object_types_hashref, $object_xref_mappings) = @_;
--
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