From 888f38d86a16963af7f84bbca12bf794e6b487fd Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Fri, 16 Jul 2010 09:57:15 +0000
Subject: [PATCH] Hack:
- @seqeds = sort { $b->start() <=> $a->start() } @seqeds;
+ # HACK: The translation ENSP00000420939 somehow makes the next line
+ # bomb out ($a or $b becomes undef) if the start() method
+ # is used. I haven't been able to find out why. It has 10
+ # Selenocysteine seqedits that looks correct.
+ # /Andreas (release 59)
+ my @seqeds = sort { $b->{'start'} <=> $a->{'start'} } @seqeds;
---
modules/Bio/EnsEMBL/Translation.pm | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Translation.pm b/modules/Bio/EnsEMBL/Translation.pm
index ece9fae66c..91039753fc 100755
--- a/modules/Bio/EnsEMBL/Translation.pm
+++ b/modules/Bio/EnsEMBL/Translation.pm
@@ -1011,7 +1011,12 @@ sub modify_translation {
# Sort in reverse order to avoid complication of adjusting
# downstream edits.
- @seqeds = sort { $b->start() <=> $a->start() } @seqeds;
+ # HACK: The translation ENSP00000420939 somehow makes the next line
+ # bomb out ($a or $b becomes undef) if the start() method
+ # is used. I haven't been able to find out why. It has 10
+ # Selenocysteine seqedits that looks correct.
+ # /Andreas (release 59)
+ my @seqeds = sort { $b->{'start'} <=> $a->{'start'} } @seqeds;
# Apply all edits.
my $peptide = $seq->seq();
--
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