From 894b293486cc8b6a86d04019342689a30ec59003 Mon Sep 17 00:00:00 2001
From: Alessandro Vullo <avullo@ebi.ac.uk>
Date: Wed, 24 Aug 2016 16:47:06 +0100
Subject: [PATCH] [ENSCORESW-1846]. Should not set pr_port to port, but also
use default MySQL port when not defined.
---
misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm | 5 +----
1 file changed, 1 insertion(+), 4 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
index dda62dc992..0bea3c8a7d 100644
--- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
@@ -406,10 +406,7 @@ sub process_file {
$pr_user = $species_hash{'pr_user'};
$pr_dbname = $species_hash{'pr_dbname'};
if(defined($species_hash{'pr_port'})){
- $pr_port = $species_hash{'port'};
- }
- else{
- $pr_port = '';
+ $pr_port = $species_hash{'pr_port'};
}
my $previous_core = new XrefMapper::db(-host => $pr_host,
--
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