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ensembl-gh-mirror
ensembl
Commits
8d084737
Commit
8d084737
authored
Jul 11, 2013
by
Alessandro Vullo
Browse files
Mismatched parenthesis when building SQL query for slices in circular chromosomes with start > end
parent
df6938f3
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modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
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modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
View file @
8d084737
...
...
@@ -806,7 +806,7 @@ COORD_SYSTEM: foreach my $coord_system (@feature_coord_systems) {
.
"
OR
"
.
$table_synonym
.
"
.seq_region_start <=
"
.
$slice
->
end
.
"
OR
"
.
$table_synonym
.
"
.seq_region_end >=
"
.
$slice
->
start
.
"
OR
"
.
$table_synonym
.
"
.seq_region_end <=
"
.
$slice
->
end
.
"
OR
"
.
$table_synonym
.
"
.seq_region_start >
"
.
$table_synonym
.
"
.seq_region_end
";
.
"
OR
"
.
$table_synonym
.
"
.seq_region_start >
"
.
$table_synonym
.
"
.seq_region_end
)
";
}
else
{
$constraint
.=
"
((
"
.
$table_synonym
.
"
.seq_region_start <=
"
.
$slice
->
end
.
"
AND
"
.
$table_synonym
.
"
.seq_region_end >=
"
.
$slice
->
start
.
"
)
"
...
...
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