From 8d220a276cde2ea184db093774d191cf4eb97050 Mon Sep 17 00:00:00 2001 From: Julio Fernandez Banet <jb16@sanger.ac.uk> Date: Mon, 25 Sep 2006 10:37:19 +0000 Subject: [PATCH] Corrected error in Aedes aegypti insert into source was missing the last column value, and fixed ftp://ftp.ncbi.nih.gov/refseq/release/fungi/ download, I removed the files bigger than fungi12.* as they no longer exist --- .../xref_mapping/sql/populate_metadata.sql | 26 +++---------------- 1 file changed, 4 insertions(+), 22 deletions(-) diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index 440e593b59..366d0e37a8 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -138,10 +138,10 @@ INSERT INTO source VALUES (2856, "Anopheles_symbol", 1, 'Y', 40, 1); # aedes aegypti INSERT INTO source VALUES (7159, 'AedesGenBank', '1','Y','30', 1) ; -INSERT INTO source VALUES (2861, "ARRAY_JHU_AEG1.0_20k_v1", 1, 'Y', 40); -INSERT INTO source VALUES (2862, "ARRAY_LIV_AEGDETOX_0.25k_v1", 1, 'Y', 40); -INSERT INTO source VALUES (2863, "ARRAY_ND_TIGRTC_9.6K_v1", 1, 'Y', 40); -INSERT INTO source VALUES (2864, "ARRAY_UCR_GillMgMT_0.2K_v2", 1, 'Y', 40); +INSERT INTO source VALUES (2861, "ARRAY_JHU_AEG1.0_20k_v1", 1, 'Y', 40, 1); +INSERT INTO source VALUES (2862, "ARRAY_LIV_AEGDETOX_0.25k_v1", 1, 'Y', 40, 1); +INSERT INTO source VALUES (2863, "ARRAY_ND_TIGRTC_9.6K_v1", 1, 'Y', 40, 1); +INSERT INTO source VALUES (2864, "ARRAY_UCR_GillMgMT_0.2K_v2", 1, 'Y', 40, 1); # Uniprot alternative splice INSERT INTO source VALUES (3000, "Uniprot/Varsplic", 1, 'Y',20, 1); @@ -1240,15 +1240,6 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ (3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi17.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ (4, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.rna.fna.gz', now(), now(), "RefSeqParser"); @@ -1275,15 +1266,6 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ (3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.rna.fna.gz', now(), now(), "RefSeqParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.rna.fna.gz', now(), now(), "RefSeqParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.rna.fna.gz', now(), now(), "RefSeqParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.rna.fna.gz', now(), now(), "RefSeqParser"); -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 4932,'ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi17.rna.fna.gz', now(), now(), "RefSeqParser"); ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -- GitLab