From 8d5a9b9abd84071e9aaa97d18640af0caf172b1b Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Fri, 27 Aug 2004 13:39:35 +0000
Subject: [PATCH] Added get_available_adaptors to get the pairs of name /
adaptor modules. This should make it easier to read etc
---
modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm | 47 ++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
diff --git a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
index f95fd55bdd..306f49a7a8 100755
--- a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
@@ -260,6 +260,53 @@ sub get_db_adaptor {
}
+sub get_available_adaptors{
+
+ my %pairs = ( 'Analysis' => 'Bio::EnsEMBL::DBSQL::AnalysisAdaptor',
+ 'ArchiveStableId' => 'Bio::EnsEMBL::DBSQL::ArchiveStableIdAdaptor',
+ 'Attribute' => 'Bio::EnsEMBL::DBSQL::AttributeAdaptor',
+ 'AssemblyExceptionFeature' => 'Bio::EnsEMBL::DBSQL::AssemblyExceptionFeatureAdaptor',
+ 'AssemblyMapper' => 'Bio::EnsEMBL::DBSQL::AssemblyMapperAdaptor',
+ 'Blast' => 'Bio::EnsEMBL::External::BlastAdaptor',
+ 'MetaContainer' => 'Bio::EnsEMBL::DBSQL::MetaContainer',
+ 'CoordSystem' => 'Bio::EnsEMBL::DBSQL::CoordSystemAdaptor',
+ 'CompressedSequence' => 'Bio::EnsEMBL::DBSQL::CompressedSequenceAdaptor',
+ 'DBEntry' => 'Bio::EnsEMBL::DBSQL::DBEntryAdaptor',
+ 'DnaAlignFeature' => 'Bio::EnsEMBL::DBSQL::DnaAlignFeatureAdaptor',
+ 'DensityFeature' => 'Bio::EnsEMBL::DBSQL::DensityFeatureAdaptor',
+ 'DensityType' => 'Bio::EnsEMBL::DBSQL::DensityTypeAdaptor',
+ 'Exon' => 'Bio::EnsEMBL::DBSQL::ExonAdaptor',
+ 'Gene' => 'Bio::EnsEMBL::DBSQL::GeneAdaptor',
+ 'KaryotypeBand' => 'Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor',
+ 'Marker' => 'Bio::EnsEMBL::Map::DBSQL::MarkerAdaptor',
+ 'MarkerFeature' =>
+ 'Bio::EnsEMBL::Map::DBSQL::MarkerFeatureAdaptor',
+ 'MetaCoordContainer' => 'Bio::EnsEMBL::DBSQL::MetaCoordContainer',
+ 'MiscSet' => 'Bio::EnsEMBL::DBSQL::MiscSetAdaptor',
+ 'MiscFeature' => 'Bio::EnsEMBL::DBSQL::MiscFeatureAdaptor',
+ 'PredictionTranscript' => 'Bio::EnsEMBL::DBSQL::PredictionTranscriptAdaptor',
+ 'PredictionExon' => 'Bio::EnsEMBL::DBSQL::PredictionExonAdaptor',
+ 'ProteinFeature' => 'Bio::EnsEMBL::DBSQL::ProteinFeatureAdaptor',
+ 'ProteinAlignFeature' =>
+ 'Bio::EnsEMBL::DBSQL::ProteinAlignFeatureAdaptor',
+ 'SNP' => 'Bio::EnsEMBL::DBSQL::ProxySNPAdaptor',
+ 'QtlFeature' => 'Bio::EnsEMBL::Map::DBSQL::QtlFeatureAdaptor',
+ 'Qtl' => 'Bio::EnsEMBL::Map::DBSQL::QtlAdaptor',
+ 'RepeatConsensus' => 'Bio::EnsEMBL::DBSQL::RepeatConsensusAdaptor',
+ 'RepeatFeature' => 'Bio::EnsEMBL::DBSQL::RepeatFeatureAdaptor',
+ 'Sequence' => 'Bio::EnsEMBL::DBSQL::SequenceAdaptor',
+ 'SimpleFeature' => 'Bio::EnsEMBL::DBSQL::SimpleFeatureAdaptor',
+ 'Slice' => 'Bio::EnsEMBL::DBSQL::SliceAdaptor',
+ 'SupportingFeature' =>
+ 'Bio::EnsEMBL::DBSQL::SupportingFeatureAdaptor',
+ 'Transcript' => 'Bio::EnsEMBL::DBSQL::TranscriptAdaptor',
+ 'Translation' => 'Bio::EnsEMBL::DBSQL::TranslationAdaptor');
+
+ return (%pairs);
+}
+
+
+
###########################################################
#
--
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