From 8de01d58094f796de69cba097af46a313dd12cf0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Wed, 13 Jan 2010 15:58:19 +0000
Subject: [PATCH] Add canonical_translation_id plus data to test databases.
---
.../homo_sapiens/core/transcript.sql | 1 +
.../homo_sapiens/core/transcript.txt | 50 +++++++++----------
2 files changed, 26 insertions(+), 25 deletions(-)
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/transcript.sql b/modules/t/test-genome-DBs/homo_sapiens/core/transcript.sql
index cc6cff256f..d70381ba48 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/core/transcript.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/transcript.sql
@@ -11,6 +11,7 @@ CREATE TABLE `transcript` (
`status` enum('KNOWN','NOVEL','PUTATIVE','PREDICTED','KNOWN_BY_PROJECTION') collate latin1_bin default NULL,
`description` text collate latin1_bin,
`is_current` BOOLEAN DEFAULT 1,
+ `canonical_translation_id` int(10) unsigned,
PRIMARY KEY (`transcript_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `gene_index` (`gene_id`),
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/transcript.txt b/modules/t/test-genome-DBs/homo_sapiens/core/transcript.txt
index 12819057e8..f1ce108603 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/core/transcript.txt
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/transcript.txt
@@ -1,25 +1,25 @@
-21716 18256 1282 469283 30274334 30298904 1 152202 protein_coding KNOWN \N 1
-21717 18256 1282 469283 30285705 30300924 1 152191 protein_coding KNOWN \N 1
-21718 18257 1282 469283 30301733 30318881 1 0 protein_coding NOVEL \N 1
-21719 18258 1282 469283 30320853 30327869 -1 40090 protein_coding KNOWN \N 1
-21720 18259 1282 469283 30371004 30372906 1 102413 protein_coding KNOWN \N 1
-21721 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1
-21722 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1
-21723 18261 1282 469283 30428114 30477716 1 158525 protein_coding KNOWN \N 1
-21724 18262 1282 469283 30485596 30543114 1 120576 protein_coding KNOWN \N 1
-21725 18263 1282 469283 30565065 30566129 -1 128607 protein_coding KNOWN \N 1
-21726 18264 1282 469283 30568364 30583588 -1 17034 protein_coding KNOWN \N 1
-21727 18265 1282 469283 30583753 30593764 1 168444 protein_coding KNOWN \N 1
-21728 18265 1282 469283 30583753 30614524 1 128597 protein_coding KNOWN \N 1
-21729 18266 1282 469283 30653524 30709209 1 28819 protein_coding KNOWN \N 1
-21730 18267 1282 469283 30805794 30813218 1 29946 protein_coding KNOWN \N 1
-21731 18267 1282 469283 30735607 30815178 1 128324 protein_coding KNOWN \N 1
-21732 18268 1282 469283 30822726 30850611 -1 34892 protein_coding KNOWN \N 1
-21733 18268 1282 469283 30840814 30859269 -1 89326 protein_coding KNOWN \N 1
-21734 18269 1282 469283 30885729 30911383 -1 89323 protein_coding KNOWN \N 1
-21735 18270 1282 469283 31070930 31071301 -1 332 protein_coding KNOWN \N 1
-21736 18271 1282 469283 31074431 31089984 -1 168324 protein_coding KNOWN \N 1
-21737 18272 1282 469283 31108924 31155894 1 15966 protein_coding KNOWN \N 1
-21738 18273 1282 469283 31166507 31196939 1 97759 protein_coding KNOWN \N 1
-21739 18274 1282 469283 31210077 31225346 1 0 protein_coding NOVEL \N 1
-21740 18275 1282 965899 10060 10405 1 0 protein_coding NOVEL \N 1
+21716 18256 1282 469283 30274334 30298904 1 152202 protein_coding KNOWN \N 1 21716
+21717 18256 1282 469283 30285705 30300924 1 152191 protein_coding KNOWN \N 1 21717
+21718 18257 1282 469283 30301733 30318881 1 0 protein_coding NOVEL \N 1 21718
+21719 18258 1282 469283 30320853 30327869 -1 40090 protein_coding KNOWN \N 1 21719
+21720 18259 1282 469283 30371004 30372906 1 102413 protein_coding KNOWN \N 1 21720
+21721 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1 21721
+21722 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1 21722
+21723 18261 1282 469283 30428114 30477716 1 158525 protein_coding KNOWN \N 1 21723
+21724 18262 1282 469283 30485596 30543114 1 120576 protein_coding KNOWN \N 1 21724
+21725 18263 1282 469283 30565065 30566129 -1 128607 protein_coding KNOWN \N 1 21725
+21726 18264 1282 469283 30568364 30583588 -1 17034 protein_coding KNOWN \N 1 21726
+21727 18265 1282 469283 30583753 30593764 1 168444 protein_coding KNOWN \N 1 21727
+21728 18265 1282 469283 30583753 30614524 1 128597 protein_coding KNOWN \N 1 21728
+21729 18266 1282 469283 30653524 30709209 1 28819 protein_coding KNOWN \N 1 21729
+21730 18267 1282 469283 30805794 30813218 1 29946 protein_coding KNOWN \N 1 21730
+21731 18267 1282 469283 30735607 30815178 1 128324 protein_coding KNOWN \N 1 21731
+21732 18268 1282 469283 30822726 30850611 -1 34892 protein_coding KNOWN \N 1 21732
+21733 18268 1282 469283 30840814 30859269 -1 89326 protein_coding KNOWN \N 1 21733
+21734 18269 1282 469283 30885729 30911383 -1 89323 protein_coding KNOWN \N 1 21734
+21735 18270 1282 469283 31070930 31071301 -1 332 protein_coding KNOWN \N 1 21735
+21736 18271 1282 469283 31074431 31089984 -1 168324 protein_coding KNOWN \N 1 21736
+21737 18272 1282 469283 31108924 31155894 1 15966 protein_coding KNOWN \N 1 21737
+21738 18273 1282 469283 31166507 31196939 1 97759 protein_coding KNOWN \N 1 21738
+21739 18274 1282 469283 31210077 31225346 1 0 protein_coding NOVEL \N 1 21739
+21740 18275 1282 965899 10060 10405 1 0 protein_coding NOVEL \N 1 21740
--
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