diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index 40ac0ff3d5e44fa5f4d867df90e6884ef55c4ffb..bbedcf92765834515d1f581271f1bff4e9446635 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -627,101 +627,101 @@ VALUES (2611, 7719,'ftp://ftp.jgi-psf.org/pub/JGI_data/Ciona/v2.0/FM1.aa.fasta.g ## Uniprot INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (1, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser"); + (1, 51511, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (2, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser"); -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser"); + (2, 51511, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 51511, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser"); ## refseq ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/ *gpff INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +(3, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); ## refseq ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/ *rna*fna* INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ - (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz', now(), now(), "RefSeqParser"); + (4, 51511,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz', now(), now(), "RefSeqParser"); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); +VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 51511,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1300, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser"); +(1300, 51511,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser"); ## UniGene INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(6, 7719,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.data.gz', now(), now(), "UniGeneParser"); +(6, 51511,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.data.gz', now(), now(), "UniGeneParser");