Commit 90031809 authored by William McLaren's avatar William McLaren
Browse files

Updates for allele schema change

parent 3addf89a
......@@ -269,10 +269,13 @@ if (!defined($file)) {
allele a JOIN
variation v ON (
v.variation_id = a.variation_id
) JOIN
allele_code ac ON (
a.allele_code_id = ac.allele_code_id
)
WHERE
a.variation_id = ? AND
a.allele = ? AND
ac.allele = ? AND
a.frequency >= $FREQUENCY_CUTOFF AND
a.count >= $OBSERVATION_COUNT_CUTOFF AND
a.sample_id IN ($sample_ids) AND
......
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