From 9129c9c9731c7493c0d2572cd6791d89841c31c6 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Mon, 13 Dec 2004 12:35:24 +0000
Subject: [PATCH] Renamed store to parse_mappings.
---
misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm | 4 ++--
misc-scripts/xref_mapping/xref_mapper.pl | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
index 4a9fac64b2..409da5a098 100644
--- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
@@ -680,7 +680,7 @@ sub submit_depend_job {
}
-=head2 generate_core_xrefs
+=head2 parse_mappings
Arg[1] : The target file used in the exonerate run. Used to work out the Ensembl object type.
Arg[2] :
@@ -692,7 +692,7 @@ sub submit_depend_job {
=cut
-sub generate_core_xrefs {
+sub parse_mappings {
my ($self, $xref) = @_;
diff --git a/misc-scripts/xref_mapping/xref_mapper.pl b/misc-scripts/xref_mapping/xref_mapper.pl
index 51ad27563c..98cd3397da 100644
--- a/misc-scripts/xref_mapping/xref_mapper.pl
+++ b/misc-scripts/xref_mapping/xref_mapper.pl
@@ -101,7 +101,7 @@ for my $species ( @all_species ) {
$species->xref($xref); # attach xref object to species object
$species->dump_seqs();
$species->build_list_and_map();
- $species->store();
+ $species->generate_core_xrefs();
}
--
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