diff --git a/misc-scripts/id_mapping/default.conf b/misc-scripts/id_mapping/default.conf index 4770785edf7bd40d122813bc1601531a2ffe3cb3..2d90cd045cbc51a2344afb34e29c86f502598848 100644 --- a/misc-scripts/id_mapping/default.conf +++ b/misc-scripts/id_mapping/default.conf @@ -34,7 +34,8 @@ build_cache_concurrent_jobs = 200 ;chromosomes = 21,22 ; LSF parameters -lsf_opt_run = "-M7500000 -R'select[type==X86_64 && mem>7500],rusage[mem=7500]'" +lsf_opt_run = "-M3500000 -R'select[type==X86_64 && mem>3500],rusage[mem=3500]'" +;lsf_opt_run = "-M7500000 -R'select[type==X86_64 && mem>7500],rusage[mem=7500]'" ;lsf_opt_dump_cache = "-M1700000 -R'select[type==X86_64 && mem>1700],rusage[mem=1700]'" ; ScoreBuilder @@ -49,6 +50,10 @@ transcript_score_threshold = 0 synteny_rescore_jobs = 20 ;lsf_opt_synteny_rescore = +; StableIdMapper +mapping_types = gene,transcript,translation,exon +;plugin_stable_id_generator = Bio::EnsEMBL::IdMapping::StableIdGenerator::EnsemblGeneric + ; upload results into db upload_events = 1 upload_stable_ids = 1