From 94220dc66fcec22ea648948edf1771d55b444b71 Mon Sep 17 00:00:00 2001
From: Laurent Gil <lgil@ebi.ac.uk>
Date: Thu, 20 Oct 2016 11:37:46 +0100
Subject: [PATCH] Replace deprecated Variation method
---
modules/Bio/EnsEMBL/Utils/SeqDumper.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Utils/SeqDumper.pm b/modules/Bio/EnsEMBL/Utils/SeqDumper.pm
index 9ff899af5a..a15a4cc4a6 100644
--- a/modules/Bio/EnsEMBL/Utils/SeqDumper.pm
+++ b/modules/Bio/EnsEMBL/Utils/SeqDumper.pm
@@ -901,7 +901,7 @@ sub _dump_feature_table {
$self->write(@ff, '' , '/replace="'.$snp->allele_string.'"');
#$self->write(@ff, '' , '/evidence="'.$snp->status.'"');
my $rs_id = $snp->variation_name();
- my $db = $snp->source();
+ my $db = $snp->source_name();
# foreach my $link ($snp->each_DBLink) {
# my $id = $link->primary_id;
# my $db = $link->database;
--
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