Commit 94375d0e authored by Arek Icrapzych's avatar Arek Icrapzych
Browse files

adjustement for new method names. All test pass

parent a2802e5f
...@@ -77,7 +77,7 @@ else { ...@@ -77,7 +77,7 @@ else {
print STDERR "clone->id does not give the expected value!\n"; print STDERR "clone->id does not give the expected value!\n";
} }
if ($clone->_internal_id == 3) { if ($clone->dbID == 3) {
print "ok 6\n"; print "ok 6\n";
} }
...@@ -190,7 +190,7 @@ else { ...@@ -190,7 +190,7 @@ else {
} }
#Delete the current clone and test if this clone and the contigs have been deleted from the database #Delete the current clone and test if this clone and the contigs have been deleted from the database
$clone->delete(); $clone->delete_by_dbID();
#Check if the clone has been deleted #Check if the clone has been deleted
eval { eval {
......
...@@ -91,7 +91,7 @@ foreach my $clone_id (@clones) { ...@@ -91,7 +91,7 @@ foreach my $clone_id (@clones) {
foreach my $gene_id (@geneids) { foreach my $gene_id (@geneids) {
$fromdb->gene_Obj->delete($gene_id); $fromdb->gene_Obj->delete($gene_id);
} }
$don_clone->delete; $don_clone->delete_by_dbID;
print "ok 38\n"; print "ok 38\n";
check_delete(39); check_delete(39);
} }
...@@ -109,7 +109,7 @@ sub check_clone { ...@@ -109,7 +109,7 @@ sub check_clone {
print STDERR "Clone id not set correctly\n"; print STDERR "Clone id not set correctly\n";
} }
$c++; $c++;
if ($clone->_internal_id == 1) { if ($clone->dbID == 1) {
print "ok $c\n"; print "ok $c\n";
} }
else { else {
...@@ -225,9 +225,12 @@ sub check_gene { ...@@ -225,9 +225,12 @@ sub check_gene {
$c++; $c++;
my $test =0; my $test =0;
if( defined $suppexon ) { if( defined $suppexon ) {
my @sup = $suppexon->each_Supporting_Feature(); my @sup = $suppexon->each_Supporting_Feature();
my $sup = shift @sup; my $sup = shift @sup;
if( defined $sup && $sup->hseqname eq 'AB004857' ) { if( defined $sup && $sup->hseqname eq 'AB004857' ) {
$test = 1; $test = 1;
} }
......
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