From 94fa23b2832ec7189027dacf041b1de89d255a7d Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Fri, 1 Sep 2006 13:46:48 +0000
Subject: [PATCH] Added test for xref priority.
---
modules/t/dbEntries.t | 14 ++++++++------
1 file changed, 8 insertions(+), 6 deletions(-)
diff --git a/modules/t/dbEntries.t b/modules/t/dbEntries.t
index 21e2f2daff..e07e7a6372 100644
--- a/modules/t/dbEntries.t
+++ b/modules/t/dbEntries.t
@@ -91,7 +91,8 @@ my $xref = Bio::EnsEMBL::DBEntry->new
-priority => "5",
-db_display_name => "Nice friendly name",
-info_type => "PROJECTION",
- -info_text => "from human gene ENSG0000011111"
+ -info_text => "from human gene ENSG0000011111",
+ -xref_priority => "2"
);
@@ -129,25 +130,25 @@ my $tl = $tr->translation();
print STDERR "\ndb1=".$dbEntryAdaptor->store( $xref, $gene->dbID, "Gene" )."\n";
my $oxr_count = count_rows($db, 'object_xref');
-print STDERR "\n1 count is avctually".$oxr_count."\n";
+print STDERR "\n1 count is actually".$oxr_count."\n";
print STDERR "\ndb2=".$dbEntryAdaptor->store( $xref, $tr->dbID, "Transcript" );
$oxr_count = count_rows($db, 'object_xref');
print STDERR "\n2 count is avctually".$oxr_count."\n";
print STDERR "\ndb3=".$dbEntryAdaptor->store( $goref, $tl->dbID, "Translation" );
$oxr_count = count_rows($db, 'object_xref');
-print STDERR "\n3 count is avctually".$oxr_count."\n";
+print STDERR "\n3 count is actually".$oxr_count."\n";
print STDERR "\ndb4=".$dbEntryAdaptor->store( $ident_xref, $tl->dbID, "Translation" );
$oxr_count = count_rows($db, 'object_xref');
-print STDERR "\n4 count is avctually".$oxr_count."\n";
+print STDERR "\n4 count is actually".$oxr_count."\n";
print STDERR "\ndb5=".$dbEntryAdaptor->store( $ident_xref, $tr->dbID, "Transcript" );
-my ( $oxr_count, $go_count );
+my ($go_count );
$oxr_count = count_rows($db, 'object_xref');
#
# 6 right number of object xrefs in db
#
debug( "object_xref_count = $oxr_count" );
-print STDERR "\n5 count is avctually".$oxr_count."\n";
+print STDERR "\n5 count is actually".$oxr_count."\n";
ok( $oxr_count == 5 );
$xref_count = count_rows($db, 'xref');
@@ -175,6 +176,7 @@ $ident_count = count_rows($db, 'identity_xref');
debug( "Number of identity_xrefs = $ident_count" );
ok( $ident_count == 2 );
+ok($xref->xref_priority() == 2);
$multi->restore();
--
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