Commit 95407922 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

added constitutive exon run

parent d59b858a
......@@ -18,6 +18,7 @@ sub fetch_input {
my $pseudogene_density = $self->jobs('PseudogeneDensity');
my $non_coding_density = $self->jobs('NonCodingDensity');
my $gene_count = $self->jobs('GeneCount');
my $ct_exons = $self->jobs('ConstitutiveExons');
my @args = (
......@@ -37,6 +38,8 @@ sub fetch_input {
$non_coding_density->{failed_jobs},
$gene_count->{successful_jobs},
$gene_count->{failed_jobs},
$ct_exons->{successful_jobs},
$ct_exons->{failed_jobs},
$self->failed(),
$self->summary($pep_stats),
$self->summary($gene_gc),
......@@ -46,6 +49,7 @@ sub fetch_input {
$self->summary($pseudogene_density),
$self->summary($non_coding_density),
$self->summary($gene_count),
$self->summary($ct_exons),
);
my $msg = sprintf(<<'MSG', @args);
......@@ -59,6 +63,7 @@ Your FASTA Pipeline has finished. We have:
* %d species with pseudogene density (%d failed)
* %d species with non coding density (%d failed)
* %d species with gene count (%d failed)
* %d species with constitutive exons (%d failed)
%s
......@@ -82,6 +87,8 @@ Full breakdown follows ...
%s
%s
MSG
$self->param('text', $msg);
return;
......
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