From 95f6428ac96b511963097dd64a37d8e580133659 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 29 Mar 2005 14:27:14 +0000
Subject: [PATCH] add labels for wormpep
---
misc-scripts/xref_mapping/XrefParser/RefSeqGPFFParser.pm | 2 ++
misc-scripts/xref_mapping/XrefParser/UniProtParser.pm | 3 +++
2 files changed, 5 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefParser/RefSeqGPFFParser.pm b/misc-scripts/xref_mapping/XrefParser/RefSeqGPFFParser.pm
index b97b3595aa..1aa5722b65 100644
--- a/misc-scripts/xref_mapping/XrefParser/RefSeqGPFFParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/RefSeqGPFFParser.pm
@@ -169,6 +169,7 @@ sub create_xrefs {
$dep{SOURCE_ID} = $dependent_sources{'wormbase_transcript'};
$dep{LINKAGE_SOURCE_ID} = $source_id;
$dep{ACCESSION} = $ll;
+ $dep{LABEL} = $ll;
push @{$xref->{DEPENDENT_XREFS}}, \%dep;
if($ll =~ /(\S+\.\d+)/){
my $temp = $1;
@@ -176,6 +177,7 @@ sub create_xrefs {
$dep2{SOURCE_ID} = $dependent_sources{'wormbase_gene'};
$dep2{LINKAGE_SOURCE_ID} = $source_id;
$dep2{ACCESSION} = $temp;
+ $dep2{LABEL} = $temp;
push @{$xref->{DEPENDENT_XREFS}}, \%dep2;
}
}
diff --git a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
index 0cbbf6cdb1..e296e33b5a 100644
--- a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
@@ -252,6 +252,7 @@ sub create_xrefs {
$dep{LINKAGE_SOURCE_ID} = $xref->{SOURCE_ID};
$dep{SOURCE_ID} = $dependent_sources{'wormbase_transcript'};
$dep{ACCESSION} = $acc;
+ $dep{LABEL} = $acc;
push @{$xref->{DEPENDENT_XREFS}}, \%dep; # array of hashrefs
my $gene;
@@ -262,6 +263,7 @@ sub create_xrefs {
$dep2{LINKAGE_SOURCE_ID} = $xref->{SOURCE_ID};
$dep2{SOURCE_ID} = $dependent_sources{'wormbase_gene'};
$dep2{ACCESSION} = $gene;
+ $dep2{LABEL} = $gene;
push @{$xref->{DEPENDENT_XREFS}}, \%dep2; # array of hashrefs
}
@@ -274,6 +276,7 @@ sub create_xrefs {
$dep3{LINKAGE_SOURCE_ID} = $xref->{SOURCE_ID};
$dep3{SOURCE_ID} = $dependent_sources{'wormpep_id'};
$dep3{ACCESSION} = $worm_id;
+ $dep3{LABEL} = $worm_id;
push @{$xref->{DEPENDENT_XREFS}}, \%dep3; # array of hashrefs
# print $worm_id."\t".$gene."\t".$acc."\n";
--
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