diff --git a/modules/t/transcript.t b/modules/t/transcript.t index 419132a81eef2d1427c3e4f705a6bb312401bd2a..f4e546019fef1f3e817afa7f22c10d3b8a8b0e66 100644 --- a/modules/t/transcript.t +++ b/modules/t/transcript.t @@ -273,16 +273,19 @@ ok($tr->display_id() eq $tr->stable_id()); note("Test fetch_all_by_biotype"); my @transcripts = @{$ta->fetch_all_by_biotype('protein_coding')}; ok(@transcripts == 25); +my $transcriptCount = $ta->count_all_by_biotype('protein_coding'); +ok($transcriptCount == 25); @transcripts = @{$ta->fetch_all_by_biotype(['protein_coding','pseudogene'])}; note "Got ".scalar(@transcripts)." transcripts\n"; ok(@transcripts == 25); -my $transcriptCount; +$transcriptCount = $ta->count_all_by_biotype(['protein_coding', 'pseudogene']); +ok($transcriptCount == 25); # # test TranscriptAdaptor::fetch_all_by_source # note("Test fetch_all_by_source"); -my @transcripts = @{$ta->fetch_all_by_source('ensembl')}; +@transcripts = @{$ta->fetch_all_by_source('ensembl')}; note "Got ".scalar(@transcripts)." ensembl transcripts\n"; ok(@transcripts == 21); $transcriptCount = $ta->count_all_by_source('ensembl');