diff --git a/misc-scripts/xref_mapping/XrefParser/MGIParser.pm b/misc-scripts/xref_mapping/XrefParser/MGIParser.pm index 49a13157edbd38b65300b0f2d432a5bc858e1b58..5a5174dc47fe9318289583875645be51e0dac1ed 100644 --- a/misc-scripts/xref_mapping/XrefParser/MGIParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/MGIParser.pm @@ -53,12 +53,12 @@ sub run { my %description; my %accession; - my $sql = 'select source_id, priority_description from source where name like "MGI"'; + my $sql = 'select source_id from source where name like "MGI" and priority_description like "descriptions"'; my $sth = $dbi->prepare($sql); $sth->execute(); - my ($mgi_source_id, $desc); - $sth->bind_columns(\$mgi_source_id, \$desc); + my ($mgi_source_id); + $sth->bind_columns(\$mgi_source_id); my @arr; while($sth->fetch()){ push @arr, $mgi_source_id; @@ -69,7 +69,7 @@ sub run { $sth = $dbi->prepare($sql); $sth->execute(); - my ($acc, $lab, $ver); + my ($acc, $lab, $ver, $desc); $sth->bind_columns(\$acc, \$lab, \$ver, \$desc); while (my @row = $sth->fetchrow_array()) { if(defined($desc)){