From 985c940dcf7236d1286483581db338366e2f6d76 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Mon, 31 Oct 2005 12:59:53 +0000
Subject: [PATCH] Modify update() method to create a row in
analysis_description if the analysis exists but doesn't have a description.
If there is already a description, it gets updated.
---
modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm | 27 ++++++++++++++++----
1 file changed, 22 insertions(+), 5 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
index bf321c6b79..ef0801359c 100755
--- a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
@@ -490,13 +490,30 @@ sub update {
$sth->finish();
- # also update description & display label
- $sth = $self->prepare
- ("UPDATE analysis_description SET description = ?, display_label = ? WHERE analysis_id = ?");
+ # also update description & display label - may need to create these if
+ # not already there
+ $sth = $self->prepare("SELECT description FROM analysis_description WHERE analysis_id= ?");
+ $sth->execute($a->dbID);
- $sth->execute($a->description(), $a->display_label(), $a->dbID);
+ if ($sth->fetchrow_hashref) { # update if exists
- $sth->finish();
+ $sth = $self->prepare
+ ("UPDATE analysis_description SET description = ?, display_label = ? WHERE analysis_id = ?");
+
+ $sth->execute($a->description(), $a->display_label(), $a->dbID);
+
+ } else { # create new entry
+
+ if( $a->description() || $a->display_label()) {
+ $sth = $self->prepare( "INSERT IGNORE INTO analysis_description (analysis_id, display_label, description) VALUES (?,?,?)");
+ $sth->execute( $a->dbID(), $a->display_label(), $a->description() );
+ $sth->finish();
+ }
+
+ }
+
+
+ $sth->finish();
# the logic_name cache needs to be re-updated now, since we may have just
# changed the logic_name
--
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