From 98777ce7f46a1dac0d7e153b017ab592e0b5bb4b Mon Sep 17 00:00:00 2001
From: Kieron Taylor <ktaylor@ebi.ac.uk>
Date: Mon, 21 Oct 2013 13:08:52 +0000
Subject: [PATCH] Corrected POD, as per ENSCORESW-723
---
modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
index 3a064390b3..fb8c5d9974 100644
--- a/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
@@ -516,13 +516,12 @@ sub fetch_by_toplevel_location {
If we are unsuccessful at retriving a location retry taking any
possible chr prefix into account e.g. chrX and X are treated as
equivalents
- Example : my $slice = $sa->fetch_by_toplevel_location('X:1-10000')
- my $slice = $sa->fetch_by_toplevel_location('X:1-10000:-1')
+ Example : my $slice = $sa->fetch_by_location('X:1-10000','chromosome')
+ my $slice = $sa->fetch_by_location('X:1-10000:-1','toplevel')
Description : Converts an Ensembl location/region into the sequence region
name, start and end and passes them onto C<fetch_by_region()>.
- The code assumes that the required slice is on the top level
- coordinate system. The code assumes that location formatting
- is not perfect and will perform basic cleanup before parsing.
+ The code assumes that location formatting is not perfect and
+ will perform basic cleanup before parsing.
Returntype : Bio::EnsEMBL::Slice
Exceptions : If $location or coordinate system is false otherwise
see C<fetch_by_region()>
--
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