From 987d1b0de1c1b53df2bbb06198adbe1f75911fe5 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Wed, 25 Nov 2015 11:33:52 +0000
Subject: [PATCH] couple more methods tested
---
modules/t/gene.t | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/modules/t/gene.t b/modules/t/gene.t
index 860040248a..bb9749d106 100644
--- a/modules/t/gene.t
+++ b/modules/t/gene.t
@@ -531,6 +531,12 @@ $analysis = $aa->fetch_by_logic_name('RepeatMask');
@genes = @{ $ga->fetch_all_by_exon_supporting_evidence('BF346221.1', 'dna_align_feature', $analysis) };
is(scalar(@genes), 0, "No genes for random analysis");
+#
+# test GeneAdaptor::fetch_all_by_logic_name
+#
+@genes = @{ $ga->fetch_all_by_logic_name('ensembl') };
+is(scalar(@genes), 21, "All genes of analysis ensembl");
+
#
# test GeneAdaptor::fetch_all_by_GOTerm
@@ -919,6 +925,11 @@ $ga->update($gene);
$gene = $ga->fetch_by_stable_id('ENSG00000355555');
ok($gene->is_current == 1);
+
+$ga->remove_by_Slice($slice);
+$geneCount = $ga->count_all_by_Slice($slice);
+is($geneCount, 0, "Genes have been removed");
+
$multi->restore;
SKIP: {
--
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