Commit 99012fe1 authored by Martin Hammond's avatar Martin Hammond
Browse files

minor tidying for VB EST logics

parent f1139c8d
...@@ -294,7 +294,7 @@ ...@@ -294,7 +294,7 @@
291 XrefExonerateDNA Sequences from various databases are matched to Ensembl transcripts using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. These are external references, or 'Xrefs'. DNA match 0 291 XrefExonerateDNA Sequences from various databases are matched to Ensembl transcripts using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. These are external references, or 'Xrefs'. DNA match 0
292 steve_mouse_cdna 0 292 steve_mouse_cdna 0
293 ExtendedByHuman 0 293 ExtendedByHuman 0
294 cdna_est_support Anopheles ESTs and cDNAs aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) and used as support for estgenes cdna_est_support 0 {'type'=>'est'} 294 est_support_estgenes ESTs and cDNAs aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) and used as support for estgenes EST support estgenes 0 {'type'=>'est'}
295 refseq_human 0 295 refseq_human 0
296 HumanOrthologue 0 296 HumanOrthologue 0
297 ExtendedByMedaka 0 297 ExtendedByMedaka 0
...@@ -304,7 +304,7 @@ ...@@ -304,7 +304,7 @@
301 green_anole_cdna Green anole cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Green anole cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'} 301 green_anole_cdna Green anole cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Green anole cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
302 green_anole_protein Green anole proteins from <a rel="external" href="http://uniprot.org">UniProtKB</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&amp;HITS=10&amp;hits=10&amp;RESULTFORMAT=&amp;andorexactfulltext=and&amp;searchid=1&amp;FIRSTINDEX=0&amp;sortspec=relevance&amp;volume=14&amp;firstpage=988&amp;resourcetype=HWCIT">GeneWise</a>. Green anole UniProtKB prot. 1 302 green_anole_protein Green anole proteins from <a rel="external" href="http://uniprot.org">UniProtKB</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&amp;HITS=10&amp;hits=10&amp;RESULTFORMAT=&amp;andorexactfulltext=and&amp;searchid=1&amp;FIRSTINDEX=0&amp;sortspec=relevance&amp;volume=14&amp;firstpage=988&amp;resourcetype=HWCIT">GeneWise</a>. Green anole UniProtKB prot. 1
303 ensembl_chicken_protein Chicken protein sequences from <a rel="external" href="http://www.ensembl.org">Ensembl</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/ 6/31">Exonerate</a>. Ensembl chicken protein 1 303 ensembl_chicken_protein Chicken protein sequences from <a rel="external" href="http://www.ensembl.org">Ensembl</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/ 6/31">Exonerate</a>. Ensembl chicken protein 1
304 est_support_genes Anopheles ESTs and cDNAs aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) and used as support for VectorBase genes EST support 1 {'type' => 'est','default' => {'contigviewbottom' => 'stack'}} 304 est_support_genes ESTs and cDNAs aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) and used as support for VectorBase genes EST support 1 {'type' => 'est','default' => {'contigviewbottom' => 'stack'}}
305 chicken_RepeatMask <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a> is used to find repeats and low-complexity sequences using a chicken repeat library. This track usually shows repeats alone (not low-complexity sequences). Repeats (Chicken) 1 305 chicken_RepeatMask <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a> is used to find repeats and low-complexity sequences using a chicken repeat library. This track usually shows repeats alone (not low-complexity sequences). Repeats (Chicken) 1
306 zebra_finch_cdna Taeniopygia guttata cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Zebra finch cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'} 306 zebra_finch_cdna Taeniopygia guttata cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Zebra finch cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
307 zebra_finch_est Taeniopygia guttata 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Zebra finch EST 1 {'type'=>'est'} 307 zebra_finch_est Taeniopygia guttata 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Zebra finch EST 1 {'type'=>'est'}
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